The structure of the core of the pyruvate dehydrogenase complex in the mitochondria of pig hearts.
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9j1w
Q-score: 0.543
The conformation of lipoy domain binding the core of the pyruvate dehydrogenase complex.
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8k0g
Q-score: 0.416
Draczkowski P, Hsu STD, Wang YS
To Be Published
- Proteasome subunit alpha type-7 (27 kDa, Protein from Homo sapiens)
- Alpha subunits of the 20s core particle (cp) of human 26s proteasome (Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 26s protease regulatory subunit 6b (47 kDa, Protein from Homo sapiens)
- Sic1_py substrate polypeptide (Complex from Saccharomyces cerevisiae)
- Proteasome subunit alpha type-2 (25 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-4 (29 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 10b (44 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 26s proteasome non-atpase regulatory subunit 12 (52 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 11 (47 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 8 (39 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 7 (37 kDa, Protein from Homo sapiens)
- Human 26s proteasome (2 MDa, Complex from Homo sapiens)
- K11/k48-branched ubiquitin (ub) chain composed of four ub. (Complex from Homo sapiens)
- 26s protease regulatory subunit 8 (45 kDa, Protein from Homo sapiens)
- 19s regulatory particle (rp) of human 26s proteasome (Complex from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 13 (42 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 6a (49 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-6 (27 kDa, Protein from Homo sapiens)
- Aaa+-atpase of 19s regulatory particle (rp) of human 26s proteasome (Complex)
- 26s protease regulatory subunit 7 (48 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-5 (26 kDa, Protein from Homo sapiens)
- Protein sic1 (7 kDa, Protein from Saccharomyces cerevisiae)
- Polyubiquitin-b (8 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 6 (45 kDa, Protein from Homo sapiens)
- Ubiquitinated substrate (Complex)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Homo sapiens)
- 26s proteasome complex subunit dss1 (8 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 26s proteasome non-atpase regulatory subunit 4 (40 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-1 (29 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 4 (49 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 1 (105 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 14 (34 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 3 (61 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 2 (100 kDa, Protein from Homo sapiens)
Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zk2
Q-score: 0.637
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ DOI: doi:10.1038/s42003-024-07354-4 Pubmed: 39702771 ]
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Photosynthetic reaction center h subunit (27 kDa, Protein from Roseospirillum parvum)
- Magnesium ion (24 Da, Ligand)
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Spirilloxanthin (596 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (39 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Roseospirillum parvum)
- Reaction center protein m chain (35 kDa, Protein from Roseospirillum parvum)
- Bacteriopheophytin a (889 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Lh1-rc core complex (Complex from Roseospirillum parvum)
- Octadecane (254 Da, Ligand)
- Heme c (618 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
Cryo-EM structure of human core Rab3GAP1/2 complex
Fairlie GMJ, Nguyen KM, Nam SE, Shaw AL, Parson MAH, Shariati HR, Wang X, Jenkins ML, Gong M, Burke JE, Yip CK
Nat Commun (2025) 16 pp. 479-479 [ DOI: doi:10.1038/s41467-025-55828-8 Pubmed: 39779760 ]
- Core rab3gap1/2 complex (Complex from Homo sapiens)
- Rab3gap2 (Complex from Homo sapiens)
- Rab3gap2 (Protein from Homo sapiens)
- Rab3gap1 (Complex from Homo sapiens)
- Rab3gap1 (Protein from Homo sapiens)
Cryo-EM structure of human core Rab3GAP1/2 complex, local refinement
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8vyb
Q-score: 0.4
Fairlie GMJ, Nguyen KM, Nam SE, Shaw AL, Parson MAH, Shariati HR, Wang X, Jenkins ML, Gong M, Burke JE, Yip CK
Nat Commun (2025) 16 pp. 479-479 [ DOI: doi:10.1038/s41467-025-55828-8 Pubmed: 39779760 ]
- Core rab3gap1/2 complex (Complex from Homo sapiens)
- Rab3gap2 (Complex from Homo sapiens)
- Rab3 gtpase-activating protein non-catalytic subunit (65 kDa, Protein from Homo sapiens)
- Rab3gap1 (Complex from Homo sapiens)
- Isoform 2 of rab3 gtpase-activating protein catalytic subunit (116 kDa, Protein from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8jti
Q-score: 0.423
Draczkowski P, Hsu STD, Wang YS
To Be Published
- Proteasome subunit alpha type-7 (27 kDa, Protein from Homo sapiens)
- Alpha subunits of the 20s core particle (cp) of human 26s proteasome (Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 26s protease regulatory subunit 6b (47 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-2 (25 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-4 (29 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 10b (44 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 26s proteasome non-atpase regulatory subunit 12 (52 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 11 (47 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 7 (37 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 8 (39 kDa, Protein from Homo sapiens)
- Human 26s proteasome (2 MDa, Complex)
- 26s protease regulatory subunit 8 (45 kDa, Protein from Homo sapiens)
- 19s regulatory particle (rp) of human 26s proteasome (Complex from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 13 (42 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 6a (49 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-6 (27 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 7 (48 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-5 (26 kDa, Protein from Homo sapiens)
- Aaa+-atpase of 19s regulatory particle (rp) of human 26s proteasome (Complex from Homo sapiens)
- Polyubiquitin-b (8 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 6 (45 kDa, Protein from Homo sapiens)
- 26s proteasome complex subunit dss1 (8 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 26s proteasome non-atpase regulatory subunit 4 (40 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-1 (29 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 4 (49 kDa, Protein from Homo sapiens)
- K11/k48-branched ubiquitin (ub) chain composed of four ub. (8 MDa, Complex from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 1 (105 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 14 (34 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 3 (61 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 2 (100 kDa, Protein from Homo sapiens)
Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) without any bound substrate.
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8jri
Q-score: 0.443
Draczkowski P, Hsu STD, Wang YS
To Be Published
- Proteasome subunit alpha type-7 (27 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Human 26s proteasome (Complex from Homo sapiens)
- Aaa+-atpase of 19s regulatory particle (rp) of human 26s proteasome. (Complex from Homo sapiens)
- 26s protease regulatory subunit 6b (47 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-2 (25 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-4 (29 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 10b (44 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 19s regulatory particle (rp) of human 26s proteasome. (Complex from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 12 (52 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 11 (47 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 7 (37 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 8 (39 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 8 (45 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 13 (42 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 6a (49 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-6 (27 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 7 (48 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-5 (26 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 6 (45 kDa, Protein from Homo sapiens)
- 26s proteasome complex subunit dss1 (8 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 26s proteasome non-atpase regulatory subunit 4 (40 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-1 (29 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 4 (49 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 1 (105 kDa, Protein from Homo sapiens)
- Alpha subunits belonging to the 20s core particle (cp) of human 26s proteasome. (Complex from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 14 (34 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 3 (61 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 2 (100 kDa, Protein from Homo sapiens)