SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7jqc
Q-score: 0.399
Yuan S, Peng L, Park JJ, Hu Y, Devarkar SC, Dong MB, Shen Q, Wu S, Chen S, Lomakin IB, Xiong Y
Mol Cell (2020) 80 pp. 1055-1066.e6 [ DOI: doi:10.1016/j.molcel.2020.10.034 Pubmed: 33188728 ]
- Uncharacterized protein (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Sars-cov-2 nsp1, crpv ires, and rabbit 40s ribosome complex (Complex)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Cricket paralysis virus ires rna (61 kDa, RNA from Cricket paralysis virus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 40s ribosome (Complex from Oryctolagus cuniculus)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (16 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (26 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (16 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Uncharacterized protein (18 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (Complex from Cricket paralysis virus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Sars-cov-2 nsp1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Host translation inhibitor nsp1 (4 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Rrna (602 kDa, RNA from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5it7
Q-score: 0.358
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
eLife (2016) 5 [ Pubmed: 27159451 DOI: doi:10.7554/eLife.13567 ]
- Cricket paralysis virus ires (60 kDa, Macromolecule from Cricket paralysis virus)
- Klla0d16071p (6 kDa, Protein from Yeast)
- Klla0e03455p (15 kDa, Protein from Yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from Yeast)
- Kluyveromyces lactis 80s ribosome (Complex from Kluyveromyces lactis)
- 60s ribosomal protein l41-a (3 kDa, Protein from Baker's yeast)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Klla0a07194p (15 kDa, Protein from Yeast)
- Kluyveromyces lactis 80s ribosome in complex with the cricket paralysis virus ires and eef2 (4 MDa, Complex)
- Klla0d08305p (24 kDa, Protein from Yeast)
- Klla0e23651p (17 kDa, Protein from Yeast)
- Klla0a06336p (20 kDa, Protein from Yeast)
- Eft2p (91 kDa, Protein from Saccharomyces cerevisiae P283)
- 60s ribosomal protein l3 (43 kDa, Protein from Yeast)
- Eef2 (Complex from Saccharomyces cerevisiae P283)
- 60s ribosomal protein l20 (20 kDa, Protein from Yeast)
- Klla0b01562p (16 kDa, Protein from Yeast)
- Klla0f05247p (13 kDa, Protein from Yeast)
- Klla0d16027p (26 kDa, Protein from Yeast)
- Klla0c13519p (21 kDa, Protein from Yeast)
- 40s ribosomal protein s16 (15 kDa, Protein from Yeast)
- Klla0a10483p (17 kDa, Protein from Yeast)
- Klla0e12453p (21 kDa, Protein from Yeast)
- 40s ribosomal protein s22 (14 kDa, Protein from Yeast)
- 40s ribosomal protein s8 (22 kDa, Protein from Yeast)
- Klla0e06843p (13 kDa, Protein from Yeast)
- Klla0c04809p (6 kDa, Protein from Yeast)
- Klla0b04686p (19 kDa, Protein from Yeast)
- 40s ribosomal protein s21 (9 kDa, Protein from Yeast)
- Klla0d03410p (25 kDa, Protein from Yeast)
- Klla0e00573p (25 kDa, Protein from Yeast)
- 5s ribosomal rna (38 kDa, RNA from Yeast)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Yeast)
- Klla0b01474p (14 kDa, Protein from Yeast)
- 18s ribosomal rna (579 kDa, RNA from Yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from Yeast)
- Klla0f08261p (19 kDa, Protein from Yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Yeast)
- Ribosomal protein l15 (24 kDa, Protein from Yeast)
- Klla0d07405p (11 kDa, Protein from Yeast)
- Klla0e12277p (35 kDa, Protein from Yeast)
- Klla0b05742p (14 kDa, Protein from Yeast)
- Klla0f09812p (23 kDa, Protein from Yeast)
- Klla0e05941p (9 kDa, Protein from Yeast)
- 40s ribosomal protein s0 (22 kDa, Protein from Yeast)
- 40s ribosomal protein s4 (29 kDa, Protein from Yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from Yeast)
- Klla0b08173p (11 kDa, Protein from Yeast)
- 60s ribosomal protein l13 (22 kDa, Protein from Yeast)
- 40s ribosomal protein s27 (8 kDa, Protein from Yeast)
- Klla0d06941p (33 kDa, Protein from Yeast)
- Ubiquitin-40s ribosomal protein s27a (7 kDa, Protein from Yeast)
- 60s ribosomal protein l36 (10 kDa, Protein from Yeast)
- Klla0f04499p (21 kDa, Protein from Yeast)
- 5.8s ribosomal rna (50 kDa, RNA from Yeast)
- Klla0d05181p (11 kDa, Protein from Yeast)
- Klla0c18216p (8 kDa, Protein from Yeast)
- Ul11 (12 kDa, Protein from Yeast)
- Klla0e06997p (13 kDa, Protein from Yeast)
- Klla0f25542p (12 kDa, Protein from Yeast)
- Klla0e23673p (20 kDa, Protein from Yeast)
- Klla0f18040p (16 kDa, Protein from Yeast)
- 40s ribosomal protein s14 (13 kDa, Protein from Yeast)
- Klla0d05115p (11 kDa, Protein from Yeast)
- Klla0d10659p (22 kDa, Protein from Yeast)
- Klla0b13409p (14 kDa, Protein from Yeast)
- Klla0b02937p (12 kDa, Protein from Yeast)
- 40s ribosomal protein s29 (6 kDa, Protein from Yeast)
- (2s)-1-amino-n,n,n-trimethyl-1-oxobutan-2-aminium (145 Da, Ligand)
- Ubiquitin fusion protein (5 kDa, Protein from Yeast)
- 60s ribosomal protein l24 (7 kDa, Protein from Yeast)
- 40s ribosomal protein s6 (25 kDa, Protein from Yeast)
- 40s ribosomal protein s28 (7 kDa, Protein from Yeast)
- 25s ribosomal rna (1 MDa, Macromolecule from Yeast)
- Klla0f04675p (22 kDa, Protein from Yeast)
- Klla0b06182p (7 kDa, Protein from Yeast)
- Klla0c08371p (13 kDa, Protein from Yeast)
- Klla0a07227p (20 kDa, Protein from Yeast)
- Cricket paralysis virus ires (Complex from Cricket paralysis virus)
- Klla0b07139p (38 kDa, Protein from Yeast)
- Rps23 (16 kDa, Protein from Yeast)
- 40s ribosomal protein s1 (24 kDa, Protein from Yeast)
- 60s ribosomal protein l44 (11 kDa, Protein from Yeast)
- Klla0d05643p (24 kDa, Protein from Yeast)
- Klla0f07843p (13 kDa, Protein from Yeast)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein (24 kDa, Protein from Yeast)
- Rpl28 (16 kDa, Protein from Yeast)
- Ribosomal protein l37 (9 kDa, Protein from Yeast)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5it9
Q-score: 0.314
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
eLife (2016) 5 [ Pubmed: 27159451 DOI: doi:10.7554/eLife.13567 ]
- Ribosomal protein es26 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us9 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es24 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us4 (20 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es10 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us2 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us13 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es12 (13 kDa, Protein from Kluyveromyces lactis)
- 18s ribosomal rna (573 kDa, RNA from Kluyveromyces lactis)
- Cricket paralysis virus ires rna (61 kDa, RNA from Cricket paralysis virus)
- Ribosomal protein es27 (8 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es30 (6 kDa, Protein from Kluyveromyces lactis)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us8 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein rack1 (35 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es6 (25 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es1 (24 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es8 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us17 (17 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us7 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us21 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es17 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es4 (29 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es21 (9 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es19 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es31 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es25 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us3 (24 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us5 (23 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us19 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us10 (12 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es28 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us14 (13 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es7 (21 kDa, Protein from Kluyveromyces lactis)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein us15 (16 kDa, Protein from Kluyveromyces lactis)
- Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus ires (2 MDa, Complex from Kluyveromyces lacti)
- Ribosomal protein es29 (6 kDa, Protein from Kluyveromyces lactis)
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 4d5n, 4d5l, 4d5y
Q-score: 0.10566667
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CM
Mol Cell (2015) 57 pp. 422-432 [ Pubmed: 25601755 DOI: doi:10.1016/j.molcel.2014.12.016 ]
- Eukaryoric release factor 1 (50 kDa, Protein from Homo sapiens)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Ribosomal 80s termination complex with crpv ires-rna and erf1 (4 MDa, Sample)
- Cricket paralysis virus ires rna (RNA from Cricket paralysis virus)
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 4d61, 4d67
Q-score: 0.1345
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CM
Mol Cell (2015) 57 pp. 422-432 [ Pubmed: 25601755 DOI: doi:10.1016/j.molcel.2014.12.016 ]
- Ribosomal 80s termination complex with crpv ires-rna, erf1 and erf3 (4 MDa, Sample)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Eukaryotic release factor 3 (68 kDa, Protein from Homo sapiens)
- Cricket paralysis virus ires rna (RNA from Cricket paralysis virus)
- Eukaryoric release factor 1 (50 kDa, Protein from Homo sapiens)