High-resolution C. elegans 80S ribosome structure - class 1
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cai
Q-score: 0.575
Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA
RNA (2024) 30 pp. 1513-1528 [ Pubmed: 39209556 DOI: doi:10.1261/rna.080103.124 ]
- Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
- Mrna (3 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
- Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
- Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
- El41 (3 kDa, Protein from Caenorhabditis elegans)
- Spermidine (145 Da, Ligand)
- Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
- 5s rrna (38 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
- 28s rrna (1 MDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
- Trna (24 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
- 5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
- 18s rrna (565 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
- 60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
High resolution C. elegans 80S ribosome structure
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9bh5
Q-score: 0.517
Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA
RNA (2024) 30 pp. 1513-1528 [ Pubmed: 39209556 DOI: doi:10.1261/rna.080103.124 ]
- Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
- Mrna (3 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
- Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
- Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
- El41 (3 kDa, Protein from Caenorhabditis elegans)
- Spermidine (145 Da, Ligand)
- Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
- 5s rrna (38 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
- 28s rrna (1 MDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
- Trna (24 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
- 5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
- 18s rrna (565 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
- 60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6woo
Q-score: 0.487
Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernandez IS
Nat Commun (2020) 11 pp. 5003-5003 [ DOI: doi:10.1038/s41467-020-18829-3 Pubmed: 33024099 ]
- El8 (25 kDa, Protein from Saccharomyces cerevisiae)
- Es21 (9 kDa, Protein from Saccharomyces cerevisiae)
- Us7 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es10 (11 kDa, Protein from Saccharomyces cerevisiae)
- Eif5b (67 kDa, Protein from Saccharomyces cerevisiae)
- Us5 (23 kDa, Protein from Saccharomyces cerevisiae)
- Us3 (24 kDa, Protein from Saccharomyces cerevisiae)
- El13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es7 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul3 (43 kDa, Protein from Saccharomyces cerevisiae)
- Es6 (25 kDa, Protein from Saccharomyces cerevisiae)
- Methionine (149 Da, Ligand)
- Us17 (16 kDa, Protein from Saccharomyces cerevisiae)
- El36 (10 kDa, Protein from Saccharomyces cerevisiae)
- El38 (8 kDa, Protein from Saccharomyces cerevisiae)
- Us14 (6 kDa, Protein from Saccharomyces cerevisiae)
- Us15 (16 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- El33 (11 kDa, Protein from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Ul5 (19 kDa, Protein from Saccharomyces cerevisiae)
- El27 (15 kDa, Protein from Saccharomyces cerevisiae)
- El22 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul18 (33 kDa, Protein from Saccharomyces cerevisiae)
- Es1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Ul22 (20 kDa, Protein from Saccharomyces cerevisiae)
- Es8 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es28 (7 kDa, Protein from Saccharomyces cerevisiae)
- Es30 (6 kDa, Protein from Saccharomyces cerevisiae)
- Us10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Us13 (15 kDa, Protein from Saccharomyces cerevisiae)
- Us4 (20 kDa, Protein from Saccharomyces cerevisiae)
- Es27 (8 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- El19 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul14 (14 kDa, Protein from Saccharomyces cerevisiae)
- N-carboxy-l-threonine (163 Da, Ligand)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Us2 (22 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- El20 (20 kDa, Protein from Saccharomyces cerevisiae)
- Ul29 (13 kDa, Protein from Saccharomyces cerevisiae)
- El6 (19 kDa, Protein from Saccharomyces cerevisiae)
- El31 (12 kDa, Protein from Saccharomyces cerevisiae)
- Met-trna-imet (24 kDa, RNA from Saccharomyces cerevisiae)
- Es12 (13 kDa, Protein from Saccharomyces cerevisiae)
- El42 (11 kDa, Protein from Saccharomyces cerevisiae)
- Rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
- El21 (18 kDa, Protein from Saccharomyces cerevisiae)
- Us12 (15 kDa, Protein from Saccharomyces cerevisiae)
- Es24 (15 kDa, Protein from Saccharomyces cerevisiae)
- El40 (5 kDa, Protein from Saccharomyces cerevisiae)
- Ul10 (21 kDa, Protein from Saccharomyces cerevisiae)
- El18 (20 kDa, Protein from Saccharomyces cerevisiae)
- 80s ribosome with eif5b, met-trnaimet, mrna, and gdp (Complex from Saccharomyces cerevisiae)
- Us11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (11 kDa, Protein from Saccharomyces cerevisiae)
- El15 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es4 (29 kDa, Protein from Saccharomyces cerevisiae)
- El41 (3 kDa, Protein from Saccharomyces cerevisiae)
- L10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Es17 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul23 (13 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- El24 (7 kDa, Protein from Saccharomyces cerevisiae)
- Ul2 (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul13 (22 kDa, Protein from Saccharomyces cerevisiae)
- El37 (9 kDa, Protein from Saccharomyces cerevisiae)
- El14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul16 (24 kDa, Protein from Saccharomyces cerevisiae)
- Ul30 (25 kDa, Protein from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul1 (24 kDa, Protein from Saccharomyces cerevisiae)
- El43 (9 kDa, Protein from Saccharomyces cerevisiae)
- Ul6 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul15 (16 kDa, Protein from Saccharomyces cerevisiae)
- Es19 (15 kDa, Protein from Saccharomyces cerevisiae)
- El32 (14 kDa, Protein from Saccharomyces cerevisiae)
- Mrna (1 kDa, RNA from Saccharomyces cerevisiae)
- Es25 (8 kDa, Protein from Saccharomyces cerevisiae)
- Ul4 (38 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (15 kDa, Protein from Saccharomyces cerevisiae)
- Us8 (14 kDa, Protein from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Saccharomyces cerevisiae)
- Es31 (6 kDa, Protein from Saccharomyces cerevisiae)
- El29 (6 kDa, Protein from Saccharomyces cerevisiae)
- El34 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul24 (14 kDa, Protein from Saccharomyces cerevisiae)