Rabbit 80S ribosome as it decodes the Sec-UGA codon
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7zjw
Q-score: 0.514
Hilal T, Killam BY, Grozdanovic M, Dobosz-Bartoszek M, Loerke J, Burger J, Mielke T, Copeland PR, Simonovic M, Spahn CMT
Science (2022) 376 pp. 1338-1343 [ Pubmed: 35709277 DOI: doi:10.1126/science.abg3875 ]
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (275 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Eefsec (67 kDa, Protein from Homo sapiens)
- 60s ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Secis binding protein 2 (95 kDa, Protein from Homo sapiens)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Sodium ion (22 Da, Ligand)
- Human ser-trna-sec (28 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (Complex from Rattus norvegicus)
- Ser-trna-sec (Complex from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (Complex from Cricket paralysis virus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 80s-selenosome (3 MDa, Complex)
- 60s ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Serine (105 Da, Ligand)
- 40s ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (345 kDa, RNA from Cricket paralysis virus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Eefsec and secis binding protein 2 (Complex from Homo sapiens)
- 60s ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80S ribosome programmed with SECIS and SBP2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7zjx
Q-score: 0.428
Hilal T, Killam BY, Grozdanovic M, Dobosz-Bartoszek M, Loerke J, Burger J, Mielke T, Copeland PR, Simonovic M, Spahn CMT
Science (2022) 376 pp. 1338-1343 [ Pubmed: 35709277 DOI: doi:10.1126/science.abg3875 ]
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Guanine nucleotide-binding protein subunit beta-2-like 1 (35 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- Selenocysteine insertion sequence-binding protein 2 (Complex from Homo sapiens)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Selenocysteine insertion sequence-binding protein 2 (95 kDa, Protein from Homo sapiens)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (275 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (52 kDa, RNA from Cricket paralysis virus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 80s-sbp2-secis (3 MDa, Complex)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome (Complex from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (Complex from Rattus norvegicus)
- 40s ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (Complex from Cricket paralysis virus)
- 40s ribosomal protein s15 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin carboxyl extension protein 80 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6w2s
Q-score: 0.415
Neupane R, Pisareva VP, Rodriguez CF, Pisarev AV, Fernandez IS
eLife (2020) 9 [ DOI: doi:10.7554/eLife.54575 Pubmed: 32286223 ]
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Us5 (27 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Structure of the cricket paralysis virus 5-utr ires (crpv 5-utr-ires) bound to the small ribosomal subunit in the open state (class 1) (Complex from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit e (54 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit l (71 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit h (41 kDa, Protein from Oryctolagus cuniculus)
- Crpv 5'-utr ires (121 kDa, RNA from Cricket paralysis virus)
- 18s rrna (547 kDa, RNA from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Oryctolagus cuniculus)
- Us2 (33 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 6w2t
Q-score: 0.42
Neupane R, Pisareva VP, Rodriguez CF, Pisarev AV, Fernandez IS
eLife (2020) 9 [ DOI: doi:10.7554/eLife.54575 Pubmed: 32286223 ]
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Us5 (27 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Structure of the cricket paralysis virus 5-utr ires (crpv 5-utr-ires) bound to the small ribosomal subunit in the closed state (class 2) (Complex from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit e (54 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit l (71 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit h (41 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (547 kDa, RNA from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Oryctolagus cuniculus)
- Crpv 5'-utr ires (121 kDa, RNA from Cricket paralysis virus)
- Us2 (33 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Oryctolagus cuniculus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6d9j
Q-score: 0.188
Pisareva VP, Pisarev AV, Fernandez IS
eLife (2018) 7 [ Pubmed: 29856316 DOI: doi:10.7554/eLife.34062 ]
- Large ribosomal subunit protein el14 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (547 kDa, RNA from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (48 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (28 kDa, RNA from Escherichia coli)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- Elongation factor 2 (95 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (21 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (60 kDa, RNA from Cricket paralysis virus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l4 (44 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Mammalian 80s ribosome in complex with translocated crpv ires, p-site trna and eef2 (5 MDa, Complex from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el34 (14 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (19 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- El35 (14 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El23 (17 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5it9
Q-score: 0.314
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
eLife (2016) 5 [ Pubmed: 27159451 DOI: doi:10.7554/eLife.13567 ]
- Ribosomal protein es26 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us9 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es24 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us4 (20 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es10 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us2 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us13 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es12 (13 kDa, Protein from Kluyveromyces lactis)
- 18s ribosomal rna (573 kDa, RNA from Kluyveromyces lactis)
- Cricket paralysis virus ires rna (61 kDa, RNA from Cricket paralysis virus)
- Ribosomal protein es27 (8 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es30 (6 kDa, Protein from Kluyveromyces lactis)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us8 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein rack1 (35 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es6 (25 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es1 (24 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es8 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us17 (17 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us7 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us21 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es17 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es4 (29 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es21 (9 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es19 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es31 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es25 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us3 (24 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us5 (23 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us19 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us10 (12 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es28 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us14 (13 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es7 (21 kDa, Protein from Kluyveromyces lactis)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein us15 (16 kDa, Protein from Kluyveromyces lactis)
- Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus ires (2 MDa, Complex from Kluyveromyces lacti)
- Ribosomal protein es29 (6 kDa, Protein from Kluyveromyces lactis)