CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6woo
Q-score: 0.487
Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernandez IS
Nat Commun (2020) 11 pp. 5003-5003 [ DOI: doi:10.1038/s41467-020-18829-3 Pubmed: 33024099 ]
- El8 (25 kDa, Protein from Saccharomyces cerevisiae)
- Es21 (9 kDa, Protein from Saccharomyces cerevisiae)
- Us7 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es10 (11 kDa, Protein from Saccharomyces cerevisiae)
- Eif5b (67 kDa, Protein from Saccharomyces cerevisiae)
- Us5 (23 kDa, Protein from Saccharomyces cerevisiae)
- Us3 (24 kDa, Protein from Saccharomyces cerevisiae)
- El13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es7 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul3 (43 kDa, Protein from Saccharomyces cerevisiae)
- Es6 (25 kDa, Protein from Saccharomyces cerevisiae)
- Methionine (149 Da, Ligand)
- Us17 (16 kDa, Protein from Saccharomyces cerevisiae)
- El36 (10 kDa, Protein from Saccharomyces cerevisiae)
- El38 (8 kDa, Protein from Saccharomyces cerevisiae)
- Us14 (6 kDa, Protein from Saccharomyces cerevisiae)
- Us15 (16 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- El33 (11 kDa, Protein from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Ul5 (19 kDa, Protein from Saccharomyces cerevisiae)
- El27 (15 kDa, Protein from Saccharomyces cerevisiae)
- El22 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul18 (33 kDa, Protein from Saccharomyces cerevisiae)
- Es1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Ul22 (20 kDa, Protein from Saccharomyces cerevisiae)
- Es8 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es28 (7 kDa, Protein from Saccharomyces cerevisiae)
- Es30 (6 kDa, Protein from Saccharomyces cerevisiae)
- Us10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Us13 (15 kDa, Protein from Saccharomyces cerevisiae)
- Us4 (20 kDa, Protein from Saccharomyces cerevisiae)
- Es27 (8 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- El19 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul14 (14 kDa, Protein from Saccharomyces cerevisiae)
- N-carboxy-l-threonine (163 Da, Ligand)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Us2 (22 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- El20 (20 kDa, Protein from Saccharomyces cerevisiae)
- Ul29 (13 kDa, Protein from Saccharomyces cerevisiae)
- El6 (19 kDa, Protein from Saccharomyces cerevisiae)
- El31 (12 kDa, Protein from Saccharomyces cerevisiae)
- Met-trna-imet (24 kDa, RNA from Saccharomyces cerevisiae)
- Es12 (13 kDa, Protein from Saccharomyces cerevisiae)
- El42 (11 kDa, Protein from Saccharomyces cerevisiae)
- Rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
- El21 (18 kDa, Protein from Saccharomyces cerevisiae)
- Us12 (15 kDa, Protein from Saccharomyces cerevisiae)
- Es24 (15 kDa, Protein from Saccharomyces cerevisiae)
- El40 (5 kDa, Protein from Saccharomyces cerevisiae)
- Ul10 (21 kDa, Protein from Saccharomyces cerevisiae)
- El18 (20 kDa, Protein from Saccharomyces cerevisiae)
- 80s ribosome with eif5b, met-trnaimet, mrna, and gdp (Complex from Saccharomyces cerevisiae)
- Us11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (11 kDa, Protein from Saccharomyces cerevisiae)
- El15 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es4 (29 kDa, Protein from Saccharomyces cerevisiae)
- El41 (3 kDa, Protein from Saccharomyces cerevisiae)
- L10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Es17 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul23 (13 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- El24 (7 kDa, Protein from Saccharomyces cerevisiae)
- Ul2 (26 kDa, Protein from Saccharomyces cerevisiae)
- Ul13 (22 kDa, Protein from Saccharomyces cerevisiae)
- El37 (9 kDa, Protein from Saccharomyces cerevisiae)
- El14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul16 (24 kDa, Protein from Saccharomyces cerevisiae)
- Ul30 (25 kDa, Protein from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul1 (24 kDa, Protein from Saccharomyces cerevisiae)
- El43 (9 kDa, Protein from Saccharomyces cerevisiae)
- Ul6 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul15 (16 kDa, Protein from Saccharomyces cerevisiae)
- Es19 (15 kDa, Protein from Saccharomyces cerevisiae)
- El32 (14 kDa, Protein from Saccharomyces cerevisiae)
- Mrna (1 kDa, RNA from Saccharomyces cerevisiae)
- Es25 (8 kDa, Protein from Saccharomyces cerevisiae)
- Ul4 (38 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (15 kDa, Protein from Saccharomyces cerevisiae)
- Us8 (14 kDa, Protein from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Saccharomyces cerevisiae)
- Es31 (6 kDa, Protein from Saccharomyces cerevisiae)
- El29 (6 kDa, Protein from Saccharomyces cerevisiae)
- El34 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul24 (14 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5it9
Q-score: 0.314
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
eLife (2016) 5 [ Pubmed: 27159451 DOI: doi:10.7554/eLife.13567 ]
- Ribosomal protein es26 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us9 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es24 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us4 (20 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es10 (11 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us2 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us13 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es12 (13 kDa, Protein from Kluyveromyces lactis)
- 18s ribosomal rna (573 kDa, RNA from Kluyveromyces lactis)
- Cricket paralysis virus ires rna (61 kDa, RNA from Cricket paralysis virus)
- Ribosomal protein es27 (8 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es30 (6 kDa, Protein from Kluyveromyces lactis)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us8 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein rack1 (35 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es6 (25 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es1 (24 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es8 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us17 (17 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us7 (22 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us21 (16 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es17 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es4 (29 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es21 (9 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es19 (15 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es31 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es25 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us3 (24 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us5 (23 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us19 (14 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us10 (12 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es28 (7 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein us14 (13 kDa, Protein from Kluyveromyces lactis)
- Ribosomal protein es7 (21 kDa, Protein from Kluyveromyces lactis)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein us15 (16 kDa, Protein from Kluyveromyces lactis)
- Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus ires (2 MDa, Complex from Kluyveromyces lacti)
- Ribosomal protein es29 (6 kDa, Protein from Kluyveromyces lactis)