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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"eS8" AND database:"EMDB" AND citation_journal_name:"NAT COMMUN" AND author_name:"A"

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EMD-43972

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Non-translating S. pombe ribosome

Release date: Oct. 16, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axt
Q-score: 0.471

Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A

Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]

Sample:

Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es30b (6 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es7 (21 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us7a (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es6b (27 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es17a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us9a (15 kDa, Protein from Schizosaccharomyces pombe)
Zinc ion (65 Da, Ligand)
18s ribosomal rna (593 kDa, RNA from Schizosaccharomyces pombe)
Small ribosomal subunit protein es21 (9 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us3 (27 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us8a (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es1b (28 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es8b (22 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us11b (14 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es27 (9 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es12a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es19a (16 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us15 (16 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
Small ribosomal subunit protein es26b (13 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us14 (6 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us2a (31 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es24a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es28a (7 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es4c (29 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us5 (27 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es10b (16 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es25a (9 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us10 (13 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us13b (17 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us12a (15 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us19b (17 kDa, Protein from Schizosaccharomyces pombe)
Non-translating s. pombe ribosome (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us4b (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us17a (17 kDa, Protein from Schizosaccharomyces pombe)
5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)

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EMD-43976

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Translating S. pombe ribosome

Release date: Oct. 16, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axv
Q-score: 0.473

Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A

Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]

Sample:

Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es30b (6 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es7 (21 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein rack1 (34 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us7a (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es6b (27 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es17a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us9a (15 kDa, Protein from Schizosaccharomyces pombe)
Zinc ion (65 Da, Ligand)
18s ribosomal rna (593 kDa, RNA from Schizosaccharomyces pombe)
Small ribosomal subunit protein es21 (9 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us3 (27 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us8a (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es1b (28 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es8b (22 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us11b (14 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es27 (9 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es12a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es19a (16 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us15 (16 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
Small ribosomal subunit protein es26b (13 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us14 (6 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us2a (31 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es24a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es28a (7 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es4c (29 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us5 (27 kDa, Protein from Schizosaccharomyces pombe)
A/p trna (24 kDa, RNA from Schizosaccharomyces pombe)
Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es10b (16 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein es25a (9 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us10 (13 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us13b (17 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us12a (15 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us19b (17 kDa, Protein from Schizosaccharomyces pombe)
Mrna (3 kDa, RNA from Schizosaccharomyces pombe)
Trna (24 kDa, RNA from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
Translating s. pombe ribosome (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
Small ribosomal subunit protein us4b (22 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
Small ribosomal subunit protein us17a (17 kDa, Protein from Schizosaccharomyces pombe)
5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)

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EMD-8149

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Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-INconformation

Release date: Dec. 7, 2016
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jbh
Q-score: 0.117

Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y

Nat Commun (2016) 7 pp. 13366-13366 [ DOI: doi:10.1038/ncomms13366 Pubmed: 27819266 ]

Sample:

30s ribosomal protein us15 (18 kDa, Protein from Pyrococcus abyssi GE5)
Aif2-beta (15 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us7 (24 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us2 (23 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us5 (26 kDa, Protein from Pyrococcus abyssi GE5)
Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
30s ribosomal protein es28 (8 kDa, Protein from Pyrococcus abyssi GE5)
30s archaeal translation initiation complex (Complex from Escherichia coli)
30s ribosomal protein us8 (14 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
Aif1a (13 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein es8 (14 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us14 (6 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein es24 (11 kDa, Protein from Pyrococcus abyssi GE5)
30s archaeal translation initiation complex (Complex from Pyrococcus)
Mrna (8 kDa, RNA from Pyrococcus)
30s ribosomal protein us3 (23 kDa, Protein from Pyrococcus abyssi GE5)
Methionine (149 Da, Ligand)
30s ribosomal protein us12 (16 kDa, Protein from Pyrococcus abyssi GE5)
50s ribosomal protein ul30 (13 kDa, Protein from Pyrococcus abyssi GE5)
Aif2-alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
30s archaeal translation initiation complex (982 kDa, Complex)
Aif1 (11 kDa, Protein from Pyrococcus abyssi GE5)
16s ribosomal rna (492 kDa, RNA from Pyrococcus abyssi GE5)
Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
30s ribosomal protein es27 (5 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein us13 (16 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us9 (15 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us4 (21 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us11 (14 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us19 (15 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us3 (22 kDa, Protein from Pyrococcus abyssi GE5)
Zinc ion (65 Da, Ligand)
30s ribosomal protein es17 (7 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us17 (13 kDa, Protein from Pyrococcus abyssi GE5)
Aif2-gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein es27 (6 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein us10 (11 kDa, Protein from Pyrococcus abyssi GE5)
30s archaeal translation initiation complex (Complex from Pyrococcus abyssi GE5)
30s ribosomal protein es4 (28 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein es19 (17 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein es6 (14 kDa, Protein from Pyrococcus abyssi GE5)

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