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sample_name:"eS8" AND database:"EMDB" AND xref_links:"go" AND citation_journal_name:"NAT COMMUN"
Non-translating S. pombe ribosome
Release date: Oct. 16, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axt
Q-score: 0.471
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axt
Q-score: 0.471
Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A
Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]
Sample:
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es30b (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es7 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us7a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es6b (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es17a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us9a (15 kDa, Protein from Schizosaccharomyces pombe)
- Zinc ion (65 Da, Ligand)
- 18s ribosomal rna (593 kDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us8a (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es1b (28 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es8b (22 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us11b (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es19a (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us15 (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
- 5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es26b (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us2a (31 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es24a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es28a (7 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es4c (29 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es10b (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es25a (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us13b (17 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us19b (17 kDa, Protein from Schizosaccharomyces pombe)
- Non-translating s. pombe ribosome (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
- Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us4b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us17a (17 kDa, Protein from Schizosaccharomyces pombe)
- 5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
- 28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)
Release date: Oct. 16, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axv
Q-score: 0.473
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9axv
Q-score: 0.473
Gemin O, Gluc M, Rosa H, Purdy M, Niemann M, Peskova Y, Mattei S, Jomaa A
Nat Commun (2024) 15 pp. 8666-8666 [ DOI: doi:10.1038/s41467-024-52911-4 Pubmed: 39379376 ]
Sample:
- Large ribosomal subunit protein ul24 (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es30b (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es7 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el37b (10 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el6 (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul5a (19 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el21b (18 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us7a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul4a (39 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el30a (11 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul16a (25 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el43a (10 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es6b (27 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el29 (7 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el38a (8 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es17a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us9a (15 kDa, Protein from Schizosaccharomyces pombe)
- Zinc ion (65 Da, Ligand)
- 18s ribosomal rna (593 kDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us8a (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el20a (20 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es1b (28 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es8b (22 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us11b (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul15b (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es19a (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul18b (33 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el36b (11 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us15 (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el31 (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul3a (43 kDa, Protein from Schizosaccharomyces pombe)
- 5s ribosomal rna (78 kDa, RNA from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es26b (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el32a (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el8 (28 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul13a (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el27a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el24b (16 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us2a (31 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el15b (23 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es24a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es28a (7 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es4c (29 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Schizosaccharomyces pombe)
- A/p trna (24 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el33a (12 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es10b (16 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul14b (14 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein es25a (9 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el22 (13 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us13b (17 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el19b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul22a (20 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us12a (15 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el18b (21 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul23a (15 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us19b (17 kDa, Protein from Schizosaccharomyces pombe)
- Mrna (3 kDa, RNA from Schizosaccharomyces pombe)
- Trna (24 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul2c (27 kDa, Protein from Schizosaccharomyces pombe)
- Translating s. pombe ribosome (3 MDa, Complex from Schizosaccharomyces pombe 972h-)
- Small ribosomal subunit protein us4b (22 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul6b (21 kDa, Protein from Schizosaccharomyces pombe)
- Small ribosomal subunit protein us17a (17 kDa, Protein from Schizosaccharomyces pombe)
- 5.8s ribosomal rna (52 kDa, RNA from Schizosaccharomyces pombe)
- Large ribosomal subunit protein ul30c (28 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el28 (14 kDa, Protein from Schizosaccharomyces pombe)
- Large ribosomal subunit protein el34b (12 kDa, Protein from Schizosaccharomyces pombe)
- 28s ribosomal rna (1 MDa, RNA from Schizosaccharomyces pombe)
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ Pubmed: 39117603 DOI: doi:10.1038/s41467-024-50672-8 ]
Sample:
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (51 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- 40s ribosome bound to pdcd4 (1 MDa, Complex from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- 18s rrna (555 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ Pubmed: 39117603 DOI: doi:10.1038/s41467-024-50672-8 ]
Sample:
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (77 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
- Rrna (555 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Pdcd4-40s-eif4a-eif3-eif1 complex (2 MDa, Complex from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Eukaryotic initiation factor 4a-i (44 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Programmed cell death protein 4 (52 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- Small ribosomal subunit protein es32 (3 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Acetic acid (60 Da, Ligand)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Release date: Sept. 23, 2020
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6woo
Q-score: 0.487
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6woo
Q-score: 0.487
Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernandez IS
Nat Commun (2020) 11 pp. 5003-5003 [ Pubmed: 33024099 DOI: doi:10.1038/s41467-020-18829-3 ]
Sample:
- Us17 (16 kDa, Protein from Saccharomyces cerevisiae)
- El32 (14 kDa, Protein from Saccharomyces cerevisiae)
- Us2 (22 kDa, Protein from Saccharomyces cerevisiae)
- El37 (9 kDa, Protein from Saccharomyces cerevisiae)
- El34 (13 kDa, Protein from Saccharomyces cerevisiae)
- 80s ribosome with eif5b, met-trnaimet, mrna, and gdp (Complex from Saccharomyces cerevisiae)
- El42 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul3 (43 kDa, Protein from Saccharomyces cerevisiae)
- Methionine (149 Da, Ligand)
- Ul2 (26 kDa, Protein from Saccharomyces cerevisiae)
- El15 (24 kDa, Protein from Saccharomyces cerevisiae)
- Us12 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ul30 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ul6 (21 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Us19 (15 kDa, Protein from Saccharomyces cerevisiae)
- El20 (20 kDa, Protein from Saccharomyces cerevisiae)
- El22 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul29 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul18 (33 kDa, Protein from Saccharomyces cerevisiae)
- Es28 (7 kDa, Protein from Saccharomyces cerevisiae)
- Us4 (20 kDa, Protein from Saccharomyces cerevisiae)
- Mrna (1 kDa, RNA from Saccharomyces cerevisiae)
- Us19 (11 kDa, Protein from Saccharomyces cerevisiae)
- El33 (11 kDa, Protein from Saccharomyces cerevisiae)
- Us5 (23 kDa, Protein from Saccharomyces cerevisiae)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Es4 (29 kDa, Protein from Saccharomyces cerevisiae)
- Es31 (6 kDa, Protein from Saccharomyces cerevisiae)
- Ul14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Es10 (11 kDa, Protein from Saccharomyces cerevisiae)
- Es12 (13 kDa, Protein from Saccharomyces cerevisiae)
- El29 (6 kDa, Protein from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Saccharomyces cerevisiae)
- Es17 (14 kDa, Protein from Saccharomyces cerevisiae)
- El14 (14 kDa, Protein from Saccharomyces cerevisiae)
- N-carboxy-l-threonine (163 Da, Ligand)
- Ul13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Ul22 (20 kDa, Protein from Saccharomyces cerevisiae)
- Us14 (6 kDa, Protein from Saccharomyces cerevisiae)
- Us8 (14 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- Ul16 (24 kDa, Protein from Saccharomyces cerevisiae)
- Us3 (24 kDa, Protein from Saccharomyces cerevisiae)
- Us13 (15 kDa, Protein from Saccharomyces cerevisiae)
- El21 (18 kDa, Protein from Saccharomyces cerevisiae)
- Us7 (22 kDa, Protein from Saccharomyces cerevisiae)
- Ul10 (21 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- L10 (12 kDa, Protein from Saccharomyces cerevisiae)
- El38 (8 kDa, Protein from Saccharomyces cerevisiae)
- El6 (19 kDa, Protein from Saccharomyces cerevisiae)
- Eif5b (67 kDa, Protein from Saccharomyces cerevisiae)
- Us15 (16 kDa, Protein from Saccharomyces cerevisiae)
- El13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es30 (6 kDa, Protein from Saccharomyces cerevisiae)
- El40 (5 kDa, Protein from Saccharomyces cerevisiae)
- Es8 (22 kDa, Protein from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Saccharomyces cerevisiae)
- El19 (21 kDa, Protein from Saccharomyces cerevisiae)
- Ul5 (19 kDa, Protein from Saccharomyces cerevisiae)
- El31 (12 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- Ul1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es19 (15 kDa, Protein from Saccharomyces cerevisiae)
- Es24 (15 kDa, Protein from Saccharomyces cerevisiae)
- Us10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Es6 (25 kDa, Protein from Saccharomyces cerevisiae)
- El24 (7 kDa, Protein from Saccharomyces cerevisiae)
- Ul23 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul4 (38 kDa, Protein from Saccharomyces cerevisiae)
- Met-trna-imet (24 kDa, RNA from Saccharomyces cerevisiae)
- Es25 (8 kDa, Protein from Saccharomyces cerevisiae)
- El36 (10 kDa, Protein from Saccharomyces cerevisiae)
- El41 (3 kDa, Protein from Saccharomyces cerevisiae)
- El8 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ul15 (16 kDa, Protein from Saccharomyces cerevisiae)
- El18 (20 kDa, Protein from Saccharomyces cerevisiae)
- Ul24 (14 kDa, Protein from Saccharomyces cerevisiae)
- Us11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Es1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es21 (9 kDa, Protein from Saccharomyces cerevisiae)
- El43 (9 kDa, Protein from Saccharomyces cerevisiae)
- El27 (15 kDa, Protein from Saccharomyces cerevisiae)
- Es27 (8 kDa, Protein from Saccharomyces cerevisiae)
- Es7 (21 kDa, Protein from Saccharomyces cerevisiae)
- Rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
Release date: Dec. 7, 2016
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jbh
Q-score: 0.117
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jbh
Q-score: 0.117
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ DOI: doi:10.1038/ncomms13366 Pubmed: 27819266 ]
Sample:
- 30s ribosomal protein us15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein es28 (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Escherichia coli)
- 30s ribosomal protein us8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- Aif1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us14 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es24 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus)
- Mrna (8 kDa, RNA from Pyrococcus)
- 30s ribosomal protein us3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein us12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein ul30 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)
- Aif1 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 16s ribosomal rna (492 kDa, RNA from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein es27 (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein us13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (22 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein es17 (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein es4 (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es19 (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es6 (14 kDa, Protein from Pyrococcus abyssi GE5)