Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 6zj3
Q-score: 0.548
Matzov D, Taoka M, Nobe Y, Yamauchi Y, Halfon Y, Asis N, Zimermann E, Rozenberg H, Bashan A, Bhushan S, Isobe T, Gray MW, Yonath A, Shalev-Benami M
Nucleic Acids Res (2020) 48 pp. 11750-11761 [ DOI: doi:10.1093/nar/gkaa893 Pubmed: 33091122 ]
- Ribosomal protein us19 (17 kDa, Protein from Euglena gracilis)
- 60s ribosomal protein l7a (32 kDa, Protein from Euglena gracilis)
- Ribosomal protein es4 (31 kDa, Protein from Euglena gracilis)
- Ribosomal protein es31 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein us14 (6 kDa, Protein from Euglena gracilis)
- Ribosomal protein es26 (13 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 13 (27 kDa, RNA from Euglena gracilis)
- Ribosomal protein el21 (18 kDa, Protein from Euglena gracilis)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein el34 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein el32 (16 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 10 (20 kDa, RNA from Euglena gracilis)
- A-site trna (3 kDa, RNA from Euglena gracilis)
- Ribosomal protein es7 (22 kDa, Protein from Euglena gracilis)
- 60s ribosomal protein l10 (24 kDa, Protein from Euglena gracilis)
- Ribosomal protein us17 (19 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul15 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul18 (29 kDa, Protein from Euglena gracilis)
- Ribosomal protein el6 (22 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 5 (170 kDa, RNA from Euglena gracilis)
- Ribosomal protein el41 (4 kDa, Protein from Euglena gracilis)
- E-trna (24 kDa, RNA from Euglena gracilis)
- 5.8s rrna (52 kDa, RNA from Euglena gracilis)
- Ribosomal protein el38 (9 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 4 (225 kDa, RNA from Euglena gracilis)
- Ribosomal protein es12 (15 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul24 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul5 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein el20 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein el36 (12 kDa, Protein from Euglena gracilis)
- Ribosomal protein es30 (7 kDa, Protein from Euglena gracilis)
- Ribosomal protein us3 (24 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul4 (41 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul29 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein el31 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein us15 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein es17 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein es19 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein es8 (35 kDa, Protein from Euglena gracilis)
- Ribosomal protein es27 (9 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 8 (199 kDa, RNA from Euglena gracilis)
- Ribosomal protein el18 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein el37 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein us12 (15 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 6 (75 kDa, RNA from Euglena gracilis)
- Ribosomal protein es1 (28 kDa, Protein from Euglena gracilis)
- Ribosomal protein el29 (13 kDa, Protein from Euglena gracilis)
- Rack1 (34 kDa, Protein from Euglena gracilis)
- Ribosomal protein el33 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul30 (28 kDa, Protein from Euglena gracilis)
- Ribosomal protein us8 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein us7 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein el19 (29 kDa, Protein from Euglena gracilis)
- Ribosomal protein us13 (17 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 9 (52 kDa, RNA from Euglena gracilis)
- Ribosomal protein es24 (16 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 11 (30 kDa, RNA from Euglena gracilis)
- A-trna (24 kDa, RNA from Euglena gracilis)
- Ribosomal protein us10 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein eseug1 (32 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul23 (18 kDa, Protein from Euglena gracilis)
- Ribosomal protein el14 (25 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul2 (28 kDa, Protein from Euglena gracilis)
- Ribosomal protein el40 (14 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 7 (240 kDa, RNA from Euglena gracilis)
- Lsu rrna chain 2 (113 kDa, RNA from Euglena gracilis)
- Ribosomal protein el30 (12 kDa, Protein from Euglena gracilis)
- Ribosomal protein es10 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein el22 (18 kDa, Protein from Euglena gracilis)
- Ribosomal protein el13 (25 kDa, Protein from Euglena gracilis)
- 5s rrna (38 kDa, RNA from Euglena gracilis)
- Ribosomal protein ul3 (46 kDa, Protein from Euglena gracilis)
- Ribosomal protein es6 (31 kDa, Protein from Euglena gracilis)
- Ribosomal protein el15 (24 kDa, Protein from Euglena gracilis)
- Ribosomal protein el39 (6 kDa, Protein from Euglena gracilis)
- Ribosomal protein es21 (10 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 3 (37 kDa, RNA from Euglena gracilis)
- Ribosomal protein elegr1 (7 kDa, Protein from Euglena gracilis)
- Euglena gracilis 80s ribosome (Complex from Euglena gracilis)
- Ribosomal protein ul13 (24 kDa, Protein from Euglena gracilis)
- P-trna (24 kDa, RNA from Euglena gracilis)
- Ribosomal protein us9 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein us2 (29 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul22 (18 kDa, Protein from Euglena gracilis)
- Ribosomal protein us11 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein el42 (10 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 1 (42 kDa, RNA from Euglena gracilis)
- Water (18 Da, Ligand)
- Ribosomal protein el27 (15 kDa, Protein from Euglena gracilis)
- Ribosomal protein elegr2 (8 kDa, Protein from Euglena gracilis)
- Ribosomal protein el24 (17 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 12 (18 kDa, RNA from Euglena gracilis)
- Ribosomal protein us5 (27 kDa, Protein from Euglena gracilis)
- Ribosomal protein el43 (12 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul6 (22 kDa, Protein from Euglena gracilis)
- Ribosomal protein elegr3 (7 kDa, Protein from Euglena gracilis)
- Ribosomal protein es25 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul14 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein es28 (8 kDa, Protein from Euglena gracilis)
- Ribosomal protein us4 (22 kDa, Protein from Euglena gracilis)
- 18s rrna (747 kDa, RNA from Euglena gracilis)
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6woo
Q-score: 0.487
Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernandez IS
Nat Commun (2020) 11 pp. 5003-5003 [ Pubmed: 33024099 DOI: doi:10.1038/s41467-020-18829-3 ]
- Eif5b (67 kDa, Protein from Saccharomyces cerevisiae)
- Ul23 (13 kDa, Protein from Saccharomyces cerevisiae)
- El30 (10 kDa, Protein from Saccharomyces cerevisiae)
- Rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
- El15 (24 kDa, Protein from Saccharomyces cerevisiae)
- El14 (14 kDa, Protein from Saccharomyces cerevisiae)
- El42 (11 kDa, Protein from Saccharomyces cerevisiae)
- Us8 (14 kDa, Protein from Saccharomyces cerevisiae)
- Ul10 (21 kDa, Protein from Saccharomyces cerevisiae)
- Es1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es4 (29 kDa, Protein from Saccharomyces cerevisiae)
- L10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Us17 (16 kDa, Protein from Saccharomyces cerevisiae)
- El6 (19 kDa, Protein from Saccharomyces cerevisiae)
- Us4 (20 kDa, Protein from Saccharomyces cerevisiae)
- Us5 (23 kDa, Protein from Saccharomyces cerevisiae)
- El27 (15 kDa, Protein from Saccharomyces cerevisiae)
- Methionine (149 Da, Ligand)
- Ul1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Es17 (14 kDa, Protein from Saccharomyces cerevisiae)
- El18 (20 kDa, Protein from Saccharomyces cerevisiae)
- Us11 (13 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- Ul15 (16 kDa, Protein from Saccharomyces cerevisiae)
- Es8 (22 kDa, Protein from Saccharomyces cerevisiae)
- El13 (22 kDa, Protein from Saccharomyces cerevisiae)
- N-carboxy-l-threonine (163 Da, Ligand)
- Ul30 (25 kDa, Protein from Saccharomyces cerevisiae)
- Ul13 (22 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- Us7 (22 kDa, Protein from Saccharomyces cerevisiae)
- Es6 (25 kDa, Protein from Saccharomyces cerevisiae)
- El43 (9 kDa, Protein from Saccharomyces cerevisiae)
- Ul6 (21 kDa, Protein from Saccharomyces cerevisiae)
- Us3 (24 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- El36 (10 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (11 kDa, Protein from Saccharomyces cerevisiae)
- Es10 (11 kDa, Protein from Saccharomyces cerevisiae)
- Ul5 (19 kDa, Protein from Saccharomyces cerevisiae)
- Ul29 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul16 (24 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- El41 (3 kDa, Protein from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Saccharomyces cerevisiae)
- El40 (5 kDa, Protein from Saccharomyces cerevisiae)
- Es25 (8 kDa, Protein from Saccharomyces cerevisiae)
- El22 (11 kDa, Protein from Saccharomyces cerevisiae)
- El24 (7 kDa, Protein from Saccharomyces cerevisiae)
- Es30 (6 kDa, Protein from Saccharomyces cerevisiae)
- El32 (14 kDa, Protein from Saccharomyces cerevisiae)
- Es28 (7 kDa, Protein from Saccharomyces cerevisiae)
- Es21 (9 kDa, Protein from Saccharomyces cerevisiae)
- 80s ribosome with eif5b, met-trnaimet, mrna, and gdp (Complex from Saccharomyces cerevisiae)
- Ul2 (26 kDa, Protein from Saccharomyces cerevisiae)
- El21 (18 kDa, Protein from Saccharomyces cerevisiae)
- Ul4 (38 kDa, Protein from Saccharomyces cerevisiae)
- Met-trna-imet (24 kDa, RNA from Saccharomyces cerevisiae)
- Ul18 (33 kDa, Protein from Saccharomyces cerevisiae)
- Us19 (15 kDa, Protein from Saccharomyces cerevisiae)
- El8 (25 kDa, Protein from Saccharomyces cerevisiae)
- El19 (21 kDa, Protein from Saccharomyces cerevisiae)
- El31 (12 kDa, Protein from Saccharomyces cerevisiae)
- El37 (9 kDa, Protein from Saccharomyces cerevisiae)
- El38 (8 kDa, Protein from Saccharomyces cerevisiae)
- Mrna (1 kDa, RNA from Saccharomyces cerevisiae)
- Us2 (22 kDa, Protein from Saccharomyces cerevisiae)
- Us15 (16 kDa, Protein from Saccharomyces cerevisiae)
- Us14 (6 kDa, Protein from Saccharomyces cerevisiae)
- Es19 (15 kDa, Protein from Saccharomyces cerevisiae)
- Es7 (21 kDa, Protein from Saccharomyces cerevisiae)
- Es27 (8 kDa, Protein from Saccharomyces cerevisiae)
- Es12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Ul24 (14 kDa, Protein from Saccharomyces cerevisiae)
- Us12 (15 kDa, Protein from Saccharomyces cerevisiae)
- Ul22 (20 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Ul3 (43 kDa, Protein from Saccharomyces cerevisiae)
- El29 (6 kDa, Protein from Saccharomyces cerevisiae)
- El39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Ul14 (14 kDa, Protein from Saccharomyces cerevisiae)
- El34 (13 kDa, Protein from Saccharomyces cerevisiae)
- Es24 (15 kDa, Protein from Saccharomyces cerevisiae)
- Us13 (15 kDa, Protein from Saccharomyces cerevisiae)
- El20 (20 kDa, Protein from Saccharomyces cerevisiae)
- Us10 (12 kDa, Protein from Saccharomyces cerevisiae)
- Es31 (6 kDa, Protein from Saccharomyces cerevisiae)
- El33 (11 kDa, Protein from Saccharomyces cerevisiae)
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6yal
Q-score: 0.379
Simonetti A, Guca E, Bochler A, Kuhn L, Hashem Y
Cell Rep (2020) 31 pp. 107497-107497 [ Pubmed: 32268096 DOI: doi:10.1016/j.celrep.2020.03.061 ]
- 40s ribosomal protein us17 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us7 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es26 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us2 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es1 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ls48s ic (Complex from Oryctolagus cuniculus)
- 40s ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Ls48s ic with beta-globin mrna (Complex)
- 40s ribosomal protein es27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us4 (21 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit alpha (32 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (601 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit gamma (45 kDa, Protein from Oryctolagus cuniculus)
- Beta-globin mrna (13 kDa, RNA from Homo sapiens)
- 40s ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us8 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es8 (23 kDa, Protein from Oryctolagus cuniculus)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Initiator methionylated trna (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es6 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us3 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Atp-binding cassette sub-family e member 1 (abce1) (66 kDa, Protein from Oryctolagus cuniculus)
- Iron/sulfur cluster (351 Da, Ligand)
- Eukaryotic translation initiation factor 1a (12 kDa, Protein from Oryctolagus cuniculus)
- Beta-globin mrna (Complex from Homo sapiens)
- 40s ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es25 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul41 (3 kDa, Protein from Oryctolagus cuniculus)
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6yam
Q-score: 0.257
Simonetti A, Guca E, Bochler A, Kuhn L, Hashem Y
Cell Rep (2020) 31 pp. 107497-107497 [ Pubmed: 32268096 DOI: doi:10.1016/j.celrep.2020.03.061 ]
- 40s ribosomal protein us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit alpha (30 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es26 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es30 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es1 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us7 (21 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit f (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us3 (25 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us4 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (601 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es24 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es8 (23 kDa, Protein from Oryctolagus cuniculus)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ls48s+eif3 ic (Complex from Oryctolagus cuniculus)
- Initiator methionylated trna (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es6 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us2 (23 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 2 subunit gamma (45 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Atp-binding cassette sub-family e member 1 (abce1) (66 kDa, Protein from Oryctolagus cuniculus)
- Iron/sulfur cluster (351 Da, Ligand)
- Ls48s+eif3 ic with beta-globin mrna (Complex)
- Beta-globin mrna (Complex from Homo sapiens)
- 40s ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic translation initiation factor 1a (16 kDa, Protein from Oryctolagus cuniculus)
- Beta-globin mrna (14 kDa, RNA from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (163 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6p5k
Q-score: 0.474
Acosta-Reyes F, Neupane R, Frank J, Fernandez IS
EMBO J (2019) 38 pp. e102226-e102226 [ Pubmed: 31609474 DOI: doi:10.15252/embj.2019102226 ]
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El35 (14 kDa, Protein from Oryctolagus cuniculus)
- Es29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Es31 (18 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- L14e (21 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us4 (22 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (602 kDa, RNA from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- El23 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Structure of a mammalian 80s ribosome in complex with the israeli acute paralysis virus ires (class 3) (Complex)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (44 kDa, Protein from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El37 (11 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Us5 (27 kDa, Protein from Oryctolagus cuniculus)
- Us3 (31 kDa, Protein from Oryctolagus cuniculus)
- Es12 (14 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Us2 (33 kDa, Protein from Oryctolagus cuniculus)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Us13 (17 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- El34 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- Es6 (28 kDa, Protein from Oryctolagus cuniculus)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Es26 (12 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Es30 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Es1 (30 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Es25 (13 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Iapv-ires (81 kDa, RNA from Israeli acute paralysis virus)
- Es10 (17 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gz3
Q-score: 0.365
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- Ribosomal protein ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- Ribosomal protein l8 (27 kDa, Protein from Rabbit)
- Ribosomal protein s11 (17 kDa, Protein from Rabbit)
- Ribosomal protein el32 (15 kDa, Protein from Rabbit)
- Ribosomal protein us11 (14 kDa, Protein from Rabbit)
- Ribosomal protein el29 (7 kDa, Protein from Rabbit)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from Rabbit)
- Ribosomal protein el8 (26 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Enterobacteria phage SP6)
- Ribosomal protein el31 (12 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein rack 1 (34 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Ribosomal protein el21 (18 kDa, Protein from Rabbit)
- Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Complex from Enterobacteria phage SP6)
- Ribosomal protein es17 (14 kDa, Protein from Rabbit)
- Ribosomal protein el42 (12 kDa, Protein from Rabbit)
- Ribosomal protein es26 (11 kDa, Protein from Rabbit)
- Ap/p-site trna (24 kDa, RNA from Rabbit)
- Ribosomal protein us10 (11 kDa, Protein from Rabbit)
- Ribosomal protein el41 (3 kDa, Protein from Oryctolagus cuniculus)
- Trna (Complex from Saccharomyces cerevisiae)
- Ribosomal protein el33 (12 kDa, Protein from Rabbit)
- Ribosomal protein us19 (14 kDa, Protein from Rabbit)
- Ribosomal protein us13 (16 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Translocation intermediate ti-post-1 (4 MDa, Complex)
- Ribosomal protein ul15 (16 kDa, Protein from Rabbit)
- Ribosomal protein l37 (9 kDa, Protein from Rabbit)
- Ribosomal protein es8 (24 kDa, Protein from Rabbit)
- Ribosomal protein s5 (21 kDa, Protein from Rabbit)
- Ribosomal protein el36 (11 kDa, Protein from Rabbit)
- Ribosomal protein us2 (24 kDa, Protein from Rabbit)
- Ribosomal protein el30 (11 kDa, Protein from Rabbit)
- Ribosomal protein es21 (8 kDa, Protein from Rabbit)
- Ribosomal protein es25 (9 kDa, Protein from Rabbit)
- Ribosomal protein l23 (13 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein el6 (22 kDa, Protein from Rabbit)
- Ribosomal protein ul13 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el40 (5 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (20 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- Ribosomal protein es4 (28 kDa, Protein from Rabbit)
- Ribosomal protein ul10 (22 kDa, Protein from Rabbit)
- Ribosomal protein us9 (15 kDa, Protein from Rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- Ribosomal protein us5 (24 kDa, Protein from Rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from Rabbit)
- Ribosomal protein el34 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ribosomal protein es27 (9 kDa, Protein from Rabbit)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- Ribosomal protein l12 (16 kDa, Protein from Rabbit)
- Ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul3 (45 kDa, Protein from Rabbit)
- Ribosomal protein el14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es24 (14 kDa, Protein from Rabbit)
- 18s ribosomal rna (551 kDa, RNA from Rabbit)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- Ribosomal protein ul30 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es30 (6 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- Ribosomal protein ul23 (13 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein es19 (15 kDa, Protein from Rabbit)
- Ribosomal protein us3 (24 kDa, Protein from Rabbit)
- Ribosomal protein el28 (13 kDa, Protein from Rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Rabbit)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Ribosomal protein s27a (8 kDa, Protein from Rabbit)
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (24 kDa, Protein from Rabbit)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- Ribosomal protein ul18 (34 kDa, Protein from Rabbit)
- Ribosomal protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el24 (14 kDa, Protein from Rabbit)
- Ribosomal protein es10 (11 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (26 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ribosomal protein el13 (23 kDa, Protein from Oryctolagus cuniculus)
- Pe/e-site-trna (24 kDa, RNA from Saccharomyces cerevisiae)
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6mtd
Q-score: 0.486
Brown A, Baird MR, Yip MC, Murray J, Shao S
eLife (2018) 7 [ DOI: doi:10.7554/eLife.40486 Pubmed: 30355441 ]
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Es7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es30 (6 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- Eef2 (93 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- Es25 (8 kDa, Protein from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Us4 (21 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (48 kDa, RNA from Oryctolagus cuniculus)
- Ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Us9 (16 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El15 (24 kDa, Protein from Oryctolagus cuniculus)
- Es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Us3 (25 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El41 (3 kDa, Protein from Oryctolagus cuniculus)
- El24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Es4 (29 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- El6 (33 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul24 (15 kDa, Protein from Oryctolagus cuniculus)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Us17 (18 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 80s ribosome with eef2 and serbp1 (unrotated state with head swivel) (Complex from Oryctolagus cuniculus)
- Ul10 (21 kDa, Protein from Oryctolagus cuniculus)
- El36 (11 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul1 (23 kDa, Protein from Oryctolagus cuniculus)
- Es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- El37 (10 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- El14 (16 kDa, Protein from Oryctolagus cuniculus)
- Es12 (13 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Es6 (27 kDa, Protein from Oryctolagus cuniculus)
- El11 (16 kDa, Protein from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Es27 (9 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Serbp1 (3 kDa, Protein from Oryctolagus cuniculus)
- El27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Us7 (22 kDa, Protein from Oryctolagus cuniculus)
- Es28 (7 kDa, Protein from Oryctolagus cuniculus)
The complete structure of the small subunit processome
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5wlc
Q-score: 0.373
Barandun J, Chaker-Margot M, Hunziker M, Molloy KR, Chait BT, Klinge S
Nat Struct Mol Biol (2017) 24 pp. 944-953 [ DOI: doi:10.1038/nsmb.3472 Pubmed: 28945246 ]
- Rps16_us9 (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps9_us4 (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps6_es6 (27 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp6 (48 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Pno1 (30 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrp7 (34 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Enp2 (81 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps18_us13 (16 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Snu13 (13 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop56 (56 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Enp1 (55 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Zinc ion (65 Da, Ligand)
- Utp9 (64 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Mpp10 (67 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Krr1 (37 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps22_us8 (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrp9 (65 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Imp4 (33 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Fcf2 (25 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrt14 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- U3 snorna (106 kDa, RNA from Saccharomyces cerevisiae BY4741)
- Emg1 (27 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Small subunit processome (Complex from Saccharomyces cerevisiae BY4741)
- Rps4_es4 (29 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp7 (62 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps13_us15 (17 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp24 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop14 (85 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp11 (29 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp18 (66 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp10 (200 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp15 (57 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps7_es7 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp4 (87 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps23_us12 (16 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Unassigned peptides (8 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps11_us17 (17 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps24_es24 (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp20 (83 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps5_us7 (25 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp22 (140 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop58 (53 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp14 (101 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Lcp5 (40 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 5' ets (225 kDa, RNA from Saccharomyces cerevisiae BY4741)
- Utp5 (72 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp8 (65 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Kre33 (95 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Noc4 (58 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rcl1 (40 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp12 (105 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp1 (104 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp21 (104 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Sof1 (56 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps8_es8 (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 18s pre-rrna (582 kDa, RNA from Saccharomyces cerevisiae BY4741)
- Imp3 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Bud21 (23 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp30 (31 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Faf1 (38 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps14_us11 (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop1 (34 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Sas10 (69 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Bms1 (135 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrp5 (193 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps28_es28 (7 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp17 (100 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp13 (75 kDa, Protein from Saccharomyces cerevisiae BY4741)
Small subunit of Toxoplasma gondii ribosome
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 5xxu
Q-score: 0.444
Li Z, Guo Q, Zheng L, Ji Y, Xie YT, Lai DH, Lun ZR, Suo X, Gao N
Cell Res (2017) 27 pp. 1275-1288 [ DOI: doi:10.1038/cr.2017.104 Pubmed: 28809395 ]
- Ribosomal protein us14 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us10 (25 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es10 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es7 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us15 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es8 (23 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us17 (18 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es30 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us4 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us12 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es25 (18 kDa, Protein from Toxoplasma gondii)
- 18s rna (576 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein us2 (31 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es1 (29 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us19 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es24 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us11 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es27 (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es21 (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us13 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es12 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es28 (7 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us3 (26 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us7 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es6 (29 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el41 (5 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es26 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es19 (18 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us9 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es31 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us8 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es17 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us5 (29 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es4 (30 kDa, Protein from Toxoplasma gondii)
- Small subunit of toxoplasma gondii ribosome (Complex from Toxoplasma gondii)
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jbh
Q-score: 0.117
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ Pubmed: 27819266 DOI: doi:10.1038/ncomms13366 ]
- 30s ribosomal protein us9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 16s ribosomal rna (492 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein us15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein us12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Aif1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es4 (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus)
- 30s ribosomal protein es19 (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein ul30 (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)
- Aif2-alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Aif2-gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein es17 (7 kDa, Protein from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- Aif1 (11 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein us19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us14 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Escherichia coli)
- 30s ribosomal protein es28 (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (Complex from Pyrococcus)
- 30s ribosomal protein es6 (14 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein es8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es24 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein es27 (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us3 (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein us4 (21 kDa, Protein from Pyrococcus abyssi GE5)