Human nuclear RNA exosome EXO-10-MPP6 complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6h25
Q-score: 0.427
Gerlach P, Schuller JM, Bonneau F, Basquin J, Reichelt P, Falk S, Conti E
eLife (2018) 7 [ DOI: doi:10.7554/eLife.38686 Pubmed: 30047866 ]
- Exosome complex component mtr3 (28 kDa, Protein from Homo sapiens)
- Exosome complex (Complex from Homo sapiens)
- Exosome complex component rrp43 (30 kDa, Protein from Homo sapiens)
- Exosome complex component rrp41 (26 kDa, Protein from Homo sapiens)
- U44 ssrna (Complex from synthetic construct)
- Exosome complex component rrp40 (30 kDa, Protein from Homo sapiens)
- Exosome complex component rrp42 (32 kDa, Protein from Homo sapiens)
- Exosome complex component rrp45 (49 kDa, Protein from Homo sapiens)
- Exosome complex exonuclease rrp44 (109 kDa, Protein from Homo sapiens)
- Exosome complex component csl4 (21 kDa, Protein from Homo sapiens)
- U44 ssrna (13 kDa, RNA from synthetic construct)
- M-phase phosphoprotein 6 (19 kDa, Protein from Homo sapiens)
- Exosome complex component rrp46 (25 kDa, Protein from Homo sapiens)
- Human nuclear rna exosome exo-14 complex (Complex)
- Exosome complex component rrp4 (33 kDa, Protein from Homo sapiens)
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ft6
Q-score: 0.384
Schuller JM, Falk S, Fromm L, Hurt E, Conti E
Science (2018) 360 pp. 219-222 [ DOI: doi:10.1126/science.aar5428 Pubmed: 29519915 ]
- Nuclear gtp-binding protein nug1 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-60s particle (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome biogenesis protein rpf2 (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pescadillo homolog (69 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Regulator of ribosome biosynthesis (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Upf0642 protein ybl028c (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome assembly protein 4 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 7s ribosomal rna (51 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Bud site selection protein 20 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Structure of the nop53 pre-60s particle bound to the exosome nuclear cofactors (Complex)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Exosome complex exonuclease rrp6 (84 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar gtp-binding protein 2 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome nuclear cofactors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Mpp6 (954 Da, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Probable metalloprotease arx1 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna-processing protein cgr1 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp-dependent rna helicase dob1 (115 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex protein lrp1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Structure of the nuclear RNA exosome
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6fsz
Q-score: 0.283
Schuller JM, Falk S, Fromm L, Hurt E, Conti E
Science (2018) 360 pp. 219-222 [ DOI: doi:10.1126/science.aar5428 Pubmed: 29519915 ]
- Exosome complex component ski6 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp40 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp45 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp46 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp-dependent rna helicase dob1 (122 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp42 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp4 (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component csl4 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex exonuclease rrp6 (84 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nuclear rna exosome (Complex)
- Exosome complex exonuclease dis3 (113 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex protein lrp1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nuclear rna exosome (Complex from Saccharomyces cerevisiae)
- M-phase phosphoprotein 6 homolog,m-phase phosphoprotein 6 homolog,nuclear exosome-associated rna binding protein,m-phase phosphoprotein 6 homolog (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Exosome complex component rrp43 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleic acid (Complex from Saccharomyces cerevisiae)
- Rna (5'-r(p*ap*ap*ap*ap*up*up*up*ap*ap*ap*up*up*up*up*up*up*up*up*up*up*up*up*u)-3') (7 kDa, RNA from Saccharomyces cerevisiae)
- Exosome complex component mtr3 (27 kDa, Protein from Saccharomyces cerevisiae)