CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(main class)
Resolution: 4.26 Å
EM Method: Helical reconstruction
Fitted PDBs: 7niq
Q-score: 0.304
Yu Q, Herrero Del Valle A, Singh R, Modis Y
Nat Commun (2021) 12 pp. 6668-6668 [ DOI: doi:10.1038/s41467-021-27062-5 Pubmed: 34795277 ]
- Rna (Complex from Mus musculus)
- M854k mda5-dsrna filament in complex with adp-alf4(major class) (2 MDa, Complex from Mus musculus)
- Interferon-induced helicase c domain-containing protein (Protein from Mus musculus)
- Rna (RNA from Pseudomonas virus phi6)
- Interferon-induced helicase c domain-containing protein (Complex from Mus musculus)
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4(minor class)
Yu Q, Herrero Del Valle A, Singh R, Modis Y
Nat Commun (2021) 12 pp. 6668-6668 [ DOI: doi:10.1038/s41467-021-27062-5 Pubmed: 34795277 ]
- Rna (Complex from Mus musculus)
- M854k mda5-dsrna filament in complex with adp-alf4(major class) (2 MDa, Complex)
- Interferon-induced helicase c domain-containing protein (Protein from Mus musculus)
- Rna (RNA from Pseudomonas virus phi6)
- Interferon-induced helicase c domain-containing protein (Complex from Mus musculus)
CryoEM structure of the MDA5-dsRNA filament in complex with ADP with 92-degree helical twist
Yu Q, Herrero Del Valle A, Singh R, Modis Y
Nat Commun (2021) 12 pp. 6668-6668 [ DOI: doi:10.1038/s41467-021-27062-5 Pubmed: 34795277 ]
- Rna (Complex from Pseudomonas virus phi6)
- Mda5-dsrna filament in complex with adp (30 MDa, Complex)
- Interferon-induced helicase c domain-containing protein (Protein from Mus musculus)
- Rna (RNA from Pseudomonas virus phi6)
- Interferon-induced helicase c domain-containing protein (Complex from Mus musculus)
Yeast CTP Synthase (URA8) Filament bound to ATP/UTP at low pH
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7rl0
Q-score: 0.312
Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]
- Uridine 5'-triphosphate (484 Da, Ligand)
- Yeast ctp synthase (ura8) filament bound to atp/utp at low ph (256 MDa, Complex from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Ctp synthase (62 kDa, Protein from Saccharomyces cerevisiae)
Yeast CTP Synthase (URA8) Filament bound to CTP at low pH
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7rl5
Q-score: 0.247
Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]
- Ctp synthase (62 kDa, Protein from Saccharomyces cerevisiae)
- Yeast ctp synthase filament with ctp bound (256 MDa, Complex from Saccharomyces cerevisiae)
- Cytidine-5'-triphosphate (483 Da, Ligand)
Substrate-bound Ura7 filament at low pH
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 7rmf
Q-score: 0.099
Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]
CryoEM structure of the MDA5-dsRNA filament in complex with ADP with 88-degree helical twist
Yu Q, Herrero Del Valle A, Singh R, Modis Y
Nat Commun (2021) 12 pp. 6668-6668 [ DOI: doi:10.1038/s41467-021-27062-5 Pubmed: 34795277 ]
- Mda5-dsrna filament in complex with adp (30 MDa, Complex)
- Rna (Complex from synthetic construct)
- Interferon-induced helicase c domain-containing protein (Protein from Mus musculus)
- Rna (RNA from synthetic construct)
- Interferon-induced helicase c domain-containing protein (Complex from Mus musculus)
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ATP
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 7bkp
Q-score: 0.584
Yu Q, Herrero Del Valle A, Singh R, Modis Y
Nat Commun (2021) 12 pp. 6668-6668 [ DOI: doi:10.1038/s41467-021-27062-5 Pubmed: 34795277 ]
- M854k mda5-dsrna filament in complex with atp (1 MDa, Complex)
- Zinc ion (65 Da, Ligand)
- Rna (Complex from Pseudomonas virus phi6)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*cp*ap*ap*gp*cp*cp*gp*ap*gp*gp*ap*gp*ap*g)-3') (4 kDa, RNA from Pseudomonas virus phi6)
- Interferon-induced helicase c domain-containing protein (Complex from Mus musculus)
- Rna (5'-r(p*cp*up*cp*up*cp*cp*up*cp*gp*gp*cp*up*up*g)-3') (4 kDa, RNA from Pseudomonas virus phi6)
- Interferon-induced helicase c domain-containing protein 1 (116 kDa, Protein from Mus musculus)
Cryo-EM map of the end of T3SS needle
PNAS (2021) 118 [ Pubmed: 34706941 DOI: doi:10.1073/pnas.2114552118 ]
Cryo-EM structure of the T3SS needle without tip
PNAS (2021) 118 [ Pubmed: 34706941 DOI: doi:10.1073/pnas.2114552118 ]