rabbit actin in the absence of potassium
Resolution: 2.27 Å
EM Method: Helical reconstruction
Fitted PDBs: 8w36
Q-score: 0.639
To Be Published
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- Actin filament (Cellular component from Oryctolagus cuniculus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
The cryo-EM structure of the yeast RAD51 filament bound to ssDNA in the presence of ATP
Resolution: 3.06 Å
EM Method: Helical reconstruction
Fitted PDBs: 9d46
Q-score: 0.48
To Be Published
- Rad51 filament - ssdna (Complex from Saccharomyces cerevisiae)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (5 kDa, DNA from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna repair protein rad51 (34 kDa, Protein from Saccharomyces cerevisiae)
Broad substrate scope C-C oxidation in cyclodipeptides catalysed by a flavin-dependent filament
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 9exv
Q-score: 0.411
Sutherland E, Harding CJ, du Monceau de Bergendal T, Florence GJ, Ackermann K, Bode BE, Synowsky S, Sundaramoorthy R, Czekster CM
Nat Commun (2025) 16 pp. 995-995 [ DOI: doi:10.1038/s41467-025-56127-y Pubmed: 39856061 ]
- Flavin mononucleotide (456 Da, Ligand)
- Filament of nocardiopsis dassonvillei cyclodipeptide enzyme (330 kDa, Complex from Nocardiopsis dassonvillei)
- Nitroreductase (21 kDa, Protein from Nocardiopsis dassonvillei)
- Albb (11 kDa, Protein from Nocardiopsis dassonvillei)
Human liver phosphofructokinase-1 filament in the R-state conformation
Lynch EM, Hansen H, Salay L, Cooper M, Timr S, Kollman JM, Webb BA
Nat Commun (2024) 15 pp. 7323-7323 [ Pubmed: 39183237 DOI: doi:10.1038/s41467-024-51808-6 ]
- Pfkl filament (Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-dependent 6-phosphofructokinase, liver type (85 kDa, Protein from Homo sapiens)
- 6-o-phosphono-beta-d-fructofuranose (260 Da, Ligand)
- 1,6-di-o-phosphono-beta-d-fructofuranose (340 Da, Ligand)
To Be Published
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Rat skeletal muscle filament actin (Cellular component from Rattus norvegicus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Rattus norvegicus)
The cryo-EM structure of the yeast Dmc1 filament bound to ssDNA in the presence of ATP
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 9d4n
Q-score: 0.535
To Be Published
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (5 kDa, DNA from Saccharomyces cerevisiae)
- Meiotic recombination protein dmc1 (36 kDa, Protein from Saccharomyces cerevisiae)
- Cryo-em structure of yeast dmc1 filament bound on ssdna in the presence of atp (Complex from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Rad54peptide
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9e6l
Q-score: 0.459
To Be Published
- Rad51 nucleoprotein filament bound to rad54 peptide (Complex from Saccharomyces cerevisiae)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (5 kDa, DNA from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna repair and recombination protein rad54 (4 kDa, Protein from Saccharomyces cerevisiae)
- Dna repair protein rad51 (34 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of yeast Rad51 nucleoprotein filament bound to Hed1
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9e6n
Q-score: 0.508
To Be Published
- Meiosis-specific protein hed1 (3 kDa, Protein from Saccharomyces cerevisiae)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (5 kDa, DNA from Saccharomyces cerevisiae)
- Yeast rad51 nucleoprotein filament bound to hed1peptide (Complex from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna repair protein rad51 (34 kDa, Protein from Saccharomyces cerevisiae)
Salmonella effector protein SipA decorated actin filament
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8vfm
Q-score: 0.328
To Be Published
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin, alpha skeletal muscle (42 kDa, Protein from Gallus gallus)
- Salmonella effector sipa decorated actin filament (Complex)
- Salmonella effector protein sipa (Cellular component from Salmonella)
- Cell invasion protein sipa (74 kDa, Protein from Salmonella)
- Magnesium ion (24 Da, Ligand)
- Actin (Cellular component from Gallus gallus)
Cryo-EM structure of mammalian Thorase filament, 3-layer refinement
Resolution: 4.25 Å
EM Method: Single-particle
Fitted PDBs: 8vxt
Q-score: 0.153
Dar MA, Louder R, Cortes M, Chen R, Ma Q, Chakrabarti M, Umanah GKE, Dawson TM, Dawson VL
bioRxiv (2024) [ Pubmed: 39605435 DOI: doi:10.1101/2024.11.22.624887 ]
- Outer mitochondrial transmembrane helix translocase (36 kDa, Protein from Mus musculus)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Thorase filament (360 kDa, Cellular component from Mus musculus)
- Thorase monomer (Complex from Mus musculus)