Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8u7q
Q-score: 0.528
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ Pubmed: 38323936 DOI: doi:10.1083/jcb.202310139 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Impdh1(546)-s477d filament bound by gtp, atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8u7v
Q-score: 0.514
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ Pubmed: 38323936 DOI: doi:10.1083/jcb.202310139 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Impdh1(546)-s477d filament bound by gtp, atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8u8o
Q-score: 0.585
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ Pubmed: 38323936 DOI: doi:10.1083/jcb.202310139 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Impdh1(546)-s477d filament bound by atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8u8y
Q-score: 0.744
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ Pubmed: 38323936 DOI: doi:10.1083/jcb.202310139 ]
- Inosinic acid (348 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
- Impdh1(546)-s477d filament bound by atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Structure of full-length LexA bound to a RecA filament
Resolution: 2.93 Å
EM Method: Helical reconstruction
Fitted PDBs: 8trg
Q-score: 0.51
Cory MB, Li A, Hurley CM, Carman PJ, Pumroy RA, Hostetler ZM, Perez RM, Venkatesh Y, Li X, Gupta K, Petersson EJ, Kohli RM
Nat Struct Mol Biol (2024) 31 pp. 1522-1531 [ Pubmed: 38755298 DOI: doi:10.1038/s41594-024-01317-3 ]
- Dna (27-mer) (8 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Lexa dimer (Complex from Escherichia coli)
- Lexa repressor (22 kDa, Protein from Escherichia coli)
- Sos signal complex consisting of reca, ssdna, and lexa (480 kDa, Complex from Escherichia coli)
- Reca* activated filament (Complex from Escherichia coli)
- Protein reca (41 kDa, Protein from Escherichia coli)
HUMAN IMPDH1 TREATED WITH ATP, IMP, AND NAD+
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7rer
Q-score: 0.675
Burrell AL, Nie C, Said M, Simonet JC, Fernandez-Justel D, Johnson MC, Quispe J, Buey RM, Peterson JR, Kollman JM
Nat Struct Mol Biol (2022) 29 pp. 47-58 [ DOI: doi:10.1038/s41594-021-00706-2 Pubmed: 35013599 ]
- Assembly interface of impdh1 filament bound to atp, imp, nad+ (55 GDa, Complex from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
- Isoform 5 of inosine-5'-monophosphate dehydrogenase 1 (55 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
HUMAN IMPDH1 TREATED WITH ATP, IMP, AND NAD+; OCTAMER-CENTERED
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7res
Q-score: 0.575
Burrell AL, Nie C, Said M, Simonet JC, Fernandez-Justel D, Johnson MC, Quispe J, Buey RM, Peterson JR, Kollman JM
Nat Struct Mol Biol (2022) 29 pp. 47-58 [ DOI: doi:10.1038/s41594-021-00706-2 Pubmed: 35013599 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Assembly interface of impdh1 filament bound to atp, imp, nad+ (55 GDa, Complex from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
- Isoform 5 of inosine-5'-monophosphate dehydrogenase 1 (55 kDa, Protein from Homo sapiens)
HUMAN IMPDH1 TREATED WITH GTP, IMP, AND NAD+; INTERFACE-CENTERED
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7rfe
Q-score: 0.64
Burrell AL, Nie C, Said M, Simonet JC, Fernandez-Justel D, Johnson MC, Quispe J, Buey RM, Peterson JR, Kollman JM
Nat Struct Mol Biol (2022) 29 pp. 47-58 [ DOI: doi:10.1038/s41594-021-00706-2 Pubmed: 35013599 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Assembly interface of impdh1 filament bound to atp, imp, nad+ (55 GDa, Complex from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (54 kDa, Protein from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
HUMAN IMPDH1 TREATED WITH GTP, IMP, AND NAD+ OCTAMER-CENTERED
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7rfg
Q-score: 0.649
Burrell AL, Nie C, Said M, Simonet JC, Fernandez-Justel D, Johnson MC, Quispe J, Buey RM, Peterson JR, Kollman JM
Nat Struct Mol Biol (2022) 29 pp. 47-58 [ DOI: doi:10.1038/s41594-021-00706-2 Pubmed: 35013599 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Assembly interface of impdh1 filament bound to atp, imp, nad+ (55 GDa, Complex from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
- Isoform 5 of inosine-5'-monophosphate dehydrogenase 1 (55 kDa, Protein from Homo sapiens)
HUMAN RETINAL VARIANT IMPDH1(595) TREATED WITH ATP, OCTAMER-CENTERED
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7rfh
Q-score: 0.475
Burrell AL, Nie C, Said M, Simonet JC, Fernandez-Justel D, Johnson MC, Quispe J, Buey RM, Peterson JR, Kollman JM
Nat Struct Mol Biol (2022) 29 pp. 47-58 [ DOI: doi:10.1038/s41594-021-00706-2 Pubmed: 35013599 ]
- Assembly interface of impdh1 filament bound to atp, imp, nad+ (55 GDa, Complex from Homo sapiens)
- Isoform 5 of inosine-5'-monophosphate dehydrogenase 1 (63 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)