Cryo-EM structure of tomato NRC2 filament
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8xuv
Q-score: 0.404
Ma S, An C, Lawson AW, Cao Y, Sun Y, Tan EYJ, Pan J, Jirschitzka J, Kummel F, Mukhi N, Han Z, Feng S, Wu B, Schulze-Lefert P, Chai J
Nature (2024) 632 pp. 869-876 [ DOI: doi:10.1038/s41586-024-07668-7 Pubmed: 38866053 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nrc2 filament (Complex from Solanum lycopersicum)
- Inositol hexakisphosphate (660 Da, Ligand)
- Nrc2 (101 kDa, Protein from Solanum lycopersicum)
CryoEM structure of the RAD51_ADP filament
Resolution: 3.14 Å
EM Method: Helical reconstruction
Fitted PDBs: 8gyk
Q-score: 0.426
Luo SC, Yeh MC, Lien YH, Yeh HY, Siao HL, Tu IP, Chi P, Ho MC
Nat Commun (2023) 14 pp. 4993-4993 [ DOI: doi:10.1038/s41467-023-40672-5 Pubmed: 37591853 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Hrad51-adp filament intermediate (Complex from Homo sapiens)
- Dna repair protein rad51 homolog 1 (37 kDa, Protein from Homo sapiens)
Cryo-EM structure of the RecA presynaptic filament from S.pneumoniae
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 8amd
Q-score: 0.424
Hertzog M, Perry TN, Dupaigne P, Serres S, Morales V, Soulet AL, Bell JC, Margeat E, Kowalczykowski SC, Le Cam E, Fronzes R, Polard P
Nucleic Acids Res (2023) 51 pp. 2800-2817 [ DOI: doi:10.1093/nar/gkad080 Pubmed: 36806960 ]
- Protein reca (42 kDa, Protein from Streptococcus pneumoniae)
- Dna (3 kDa, DNA from Bacteriophage sp.)
- Presynaptic filament from s.pneumoniae (Complex from Streptococcus pneumoniae)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
ATPgS bound TnsC filament from shCAST system
Resolution: 3.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 7m99
Q-score: 0.477
Park JU, Tsai AW, Mehrotra E, Petassi MT, Hsieh SC, Ke A, Peters JE, Kellogg EH
Science (2021) 373 pp. 768-774 [ Pubmed: 34385391 DOI: doi:10.1126/science.abi8976 ]
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (6 kDa, DNA from synthetic construct)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (6 kDa, DNA from synthetic construct)
- Tnsc (31 kDa, Protein from Scytonema hofmannii)
- Helical filament of tnsc monomers bound to dna (45 MDa, Complex from Scytonema hofmannii)
Human DMC1 pre-synaptic complexes
Resolution: 3.33 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c9c
Q-score: 0.526
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Dmc1-ssdna filament (Complex from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from synthetic construct)
- Calcium ion (40 Da, Ligand)
Human DMC1 post-synaptic complexes
Resolution: 3.47 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c98
Q-score: 0.451
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Dmc1 (Complex)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dmc1-dsdna filament (Complex from Homo sapiens)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from synthetic construct)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from synthetic construct)
- Dna (Complex)
- Calcium ion (40 Da, Ligand)
Human DMC1 post-synaptic complexes with mismatched dsDNA
Resolution: 3.36 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c99
Q-score: 0.492
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Dmc1-dsdna filament with mismatched dsdna (Complex from Homo sapiens)
- Dmc1 (Complex)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from synthetic construct)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from synthetic construct)
- Dna (Complex)
- Calcium ion (40 Da, Ligand)
Human RAD51 post-synaptic complexes mutant (V273P, D274G)
Resolution: 3.43 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c9a
Q-score: 0.51
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Dna repair protein rad51 homolog 1 (36 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Rad51-dsdna filament (v273p d274g mutant) (Complex from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from Homo sapiens)
Human DMC1 Q244M mutant of the post-synaptic complexes
Resolution: 3.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 7cgy
Q-score: 0.513
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dmc1q244m-dsdna filament (Complex from Homo sapiens)
- Dmc1 q244m mutant (Complex)
- Homologous double strand dna (Complex)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)