Resolution: 3.54 Å
EM Method: Helical reconstruction
Fitted PDBs: 7svv
Q-score: 0.454
Park JU, Tsai AW, Chen TH, Peters JE, Kellogg EH
PNAS (2022) 119 pp. e2202590119-e2202590119 [ Pubmed: 35914146 DOI: doi:10.1073/pnas.2202590119 ]
- Amppnp-bound tnsbctd-tnsc filament from shcast element (400 kDa, Complex from [Scytonema hofmanni] UTEX 2349)
- Tnsc filament (31 kDa, Protein from [Scytonema hofmanni] UTEX 2349)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (5 kDa, DNA from synthetic construct)
- Tnsbctd (1 kDa, Protein from [Scytonema hofmanni] UTEX 2349)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (6 kDa, DNA from synthetic construct)
ATPgS bound TnsC filament from shCAST system
Resolution: 3.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 7m99
Q-score: 0.477
Park JU, Tsai AW, Mehrotra E, Petassi MT, Hsieh SC, Ke A, Peters JE, Kellogg EH
Science (2021) 373 pp. 768-774 [ Pubmed: 34385391 DOI: doi:10.1126/science.abi8976 ]
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (6 kDa, DNA from synthetic construct)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (6 kDa, DNA from synthetic construct)
- Tnsc (31 kDa, Protein from Scytonema hofmannii)
- Helical filament of tnsc monomers bound to dna (45 MDa, Complex from Scytonema hofmannii)
Cryo-EM structure of BCL6 bound to BI-3802
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6xmx
Q-score: 0.285
Slabicki M, Yoon H, Koeppel J, Nitsch L, Roy Burman SS, Di Genua C, Donovan KA, Sperling AS, Hunkeler M, Tsai JM, Sharma R, Guirguis A, Zou C, Chudasama P, Gasser JA, Miller PG, Scholl C, Frohling S, Nowak RP, Fischer ES, Ebert BL
Nature (2020) 588 pp. 164-168 [ Pubmed: 33208943 DOI: doi:10.1038/s41586-020-2925-1 ]
- B-cell lymphoma 6 protein (bcl6) filament (352 kDa, Cellular component from Homo sapiens)
- B-cell lymphoma 6 protein (44 kDa, Protein from Homo sapiens)
- 2-[6-[[5-chloranyl-2-[(3~{s},5~{r})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{n}-methyl-ethanamide (484 Da, Ligand)
Human DMC1 pre-synaptic complexes
Resolution: 3.33 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c9c
Q-score: 0.526
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Dmc1-ssdna filament (Complex from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from synthetic construct)
- Calcium ion (40 Da, Ligand)
Human DMC1 post-synaptic complexes
Resolution: 3.47 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c98
Q-score: 0.451
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Dmc1 (Complex)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dmc1-dsdna filament (Complex from Homo sapiens)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from synthetic construct)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from synthetic construct)
- Dna (Complex)
- Calcium ion (40 Da, Ligand)
Human DMC1 post-synaptic complexes with mismatched dsDNA
Resolution: 3.36 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c99
Q-score: 0.492
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Dmc1-dsdna filament with mismatched dsdna (Complex from Homo sapiens)
- Dmc1 (Complex)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from synthetic construct)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from synthetic construct)
- Dna (Complex)
- Calcium ion (40 Da, Ligand)
Human RAD51 post-synaptic complexes mutant (V273P, D274G)
Resolution: 3.43 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c9a
Q-score: 0.51
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Dna repair protein rad51 homolog 1 (36 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (2 kDa, DNA from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Rad51-dsdna filament (v273p d274g mutant) (Complex from Homo sapiens)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (2 kDa, DNA from Homo sapiens)
Human DMC1 Q244M mutant of the post-synaptic complexes
Resolution: 3.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 7cgy
Q-score: 0.513
Luo SC, Yeh HY, Lan WH, Wu YM, Yang CH, Chang HY, Su GC, Lee CY, Wu WJ, Li HW, Ho MC, Chi P, Tsai MD
Nat Commun (2021) 12 pp. 115-115 [ DOI: doi:10.1038/s41467-020-20258-1 Pubmed: 33446654 ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dmc1q244m-dsdna filament (Complex from Homo sapiens)
- Dmc1 q244m mutant (Complex)
- Homologous double strand dna (Complex)
- Meiotic recombination protein dmc1/lim15 homolog (37 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)