Symmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8sp0
Q-score: 0.33
Shen Z, Yang XY, Xia S, Huang W, Taylor DJ, Nakanishi K, Fu TM
Nature (2023) 621 pp. 154-161 [ Pubmed: 37494956 DOI: doi:10.1038/s41586-023-06456-z ]
- Guide rna (6 kDa, RNA from synthetic construct)
- Tir-apaz (53 kDa, Protein from Maribacter polysiphoniae)
- Target dna (7 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Symmetric dimer of mapsparta bound with grna/tdna hybrid (Complex from Maribacter polysiphoniae)
- Short pago (58 kDa, Protein from Maribacter polysiphoniae)
Asymmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8sp3
Q-score: 0.298
Shen Z, Yang XY, Xia S, Huang W, Taylor DJ, Nakanishi K, Fu TM
Nature (2023) 621 pp. 154-161 [ Pubmed: 37494956 DOI: doi:10.1038/s41586-023-06456-z ]
- Target dna (7 kDa, DNA from Maribacter polysiphoniae)
- Asymmetric dimer of mapsparta bound with grna/tdna hybrid (Complex from Maribacter polysiphoniae)
- Guide rna (6 kDa, RNA from Maribacter polysiphoniae)
- Tir-apaz (53 kDa, Protein from Maribacter polysiphoniae)
- Magnesium ion (24 Da, Ligand)
- Short pago (58 kDa, Protein from Maribacter polysiphoniae)
Shen Z, Yang XY, Xia S, Huang W, Taylor DJ, Nakanishi K, Fu TM
Nature (2023) 621 pp. 154-161 [ Pubmed: 37494956 DOI: doi:10.1038/s41586-023-06456-z ]
Monomeric MapSPARTA bound with guide RNA and target DNA hybrid
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8squ
Q-score: 0.304
Shen Z, Yang XY, Xia S, Huang W, Taylor DJ, Nakanishi K, Fu TM
Nature (2023) 621 pp. 154-161 [ Pubmed: 37494956 DOI: doi:10.1038/s41586-023-06456-z ]
- Target dna (7 kDa, DNA from Maribacter polysiphoniae)
- Guide rna (6 kDa, RNA from Maribacter polysiphoniae)
- Complex of mapsparta binding with grna tdna hybrid (Complex from Maribacter polysiphoniae)
- Tir-apaz (53 kDa, Protein from Maribacter polysiphoniae)
- Magnesium ion (24 Da, Ligand)
- Short pago (58 kDa, Protein from Maribacter polysiphoniae)
Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i87
Q-score: 0.53
Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H
Cell Res (2023) 33 pp. 699-711 [ DOI: doi:10.1038/s41422-023-00839-7 Pubmed: 37311833 ]
- Tir domain-containing protein (53 kDa, Protein from Maribacter polysiphoniae)
- Piwi domain-containing protein (58 kDa, Protein from Maribacter polysiphoniae)
- Dna (5'-d(p*tp*ap*tp*ap*cp*ap*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*a)-3') (5 kDa, DNA from Maribacter polysiphoniae)
- Tir-apaz/ago-grna-dna complex (Complex from Maribacter polysiphoniae)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*a)-3') (6 kDa, RNA from Maribacter polysiphoniae)
Cryo-EM structure of TIR-APAZ/Ago-gRNA complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8i88
Q-score: 0.433
Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H
Cell Res (2023) 33 pp. 699-711 [ DOI: doi:10.1038/s41422-023-00839-7 Pubmed: 37311833 ]
- Cryo-em structure of tir-apaz/ago-grna complex (Complex from Maribacter polysiphoniae)
- Rna (5'-r(p*gp*a)-3') (629 Da, RNA from Maribacter polysiphoniae)
- Tir domain-containing protein (53 kDa, Protein from Maribacter polysiphoniae)
- Piwi domain-containing protein (58 kDa, Protein from Maribacter polysiphoniae)