E.coli PNPase in complex with single 8-oxoG RNA
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8vah
Q-score: 0.426
Miller LG, Kim W, Schowe S, Taylor K, Han R, Jain V, Park R, Sherman M, Fang J, Ramirez H, Ellington A, Tamamis P, Resendiz MJE, Zhang YJ, Contreras L
PNAS (2024) 121 pp. e2317865121-e2317865121 [ Pubmed: 39495922 DOI: doi:10.1073/pnas.2317865121 ]
- Rna (5'-r(p*ap*ap*ap*ap*ap*ap*a*a*a)-3') (2 kDa, RNA from Escherichia coli)
- Rna (5'-r(p*ap*cp*ap*(8gm))-3') (1 kDa, RNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Pnpase complexed with single 8-oxo g rna (Complex from Escherichia coli)
- Polyribonucleotide nucleotidyltransferase (77 kDa, Protein from Escherichia coli)
E.coli PNPase in complex with double 8-oxoG RNA
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vak
Q-score: 0.413
Miller LG, Kim W, Schowe S, Taylor K, Han R, Jain V, Park R, Sherman M, Fang J, Ramirez H, Ellington A, Tamamis P, Resendiz MJE, Zhang YJ, Contreras L
PNAS (2024) 121 pp. e2317865121-e2317865121 [ Pubmed: 39495922 DOI: doi:10.1073/pnas.2317865121 ]
- Rna (5'-r(p*ap*ap*ap*ap*ap*ap*a*a*a)-3') (2 kDa, RNA from Escherichia coli)
- Rna (5'-r(p*cp*ap*(8gm)p*(8gm))-3') (1 kDa, RNA from Escherichia coli)
- Pnpase complexed with double 8-oxo g rna (Complex from Escherichia coli)
- Polyribonucleotide nucleotidyltransferase (77 kDa, Protein from Escherichia coli)
Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8iaz
Q-score: 0.548
Ren K, Zhou F, Zhang F, Yin M, Zhu Y, Wang S, Chen Y, Huang T, Wu Z, He J, Zhang A, Guo C, Huang Z
Cell Res (2024) 34 pp. 370-385 [ DOI: doi:10.1038/s41422-024-00952-1 Pubmed: 38575718 ]
- The complex of protein with grna and target dna (Complex from Firmicutes bacterium AM43-11BH)
- Dna (5'-d(p*cp*cp*ap*tp*tp*ap*gp*gp*ap*gp*cp*tp*gp*ap*tp*g)-3') (4 kDa, DNA from Firmicutes bacterium AM43-11BH)
- Transposase (44 kDa, Protein from Firmicutes bacterium AM43-11BH)
- Dna (5'-d(p*ap*cp*ap*tp*gp*gp*ap*cp*cp*ap*tp*cp*ap*gp*cp*tp*cp*cp*tp*ap*ap*tp*gp*g)-3') (7 kDa, DNA from Firmicutes bacterium AM43-11BH)
- Zinc ion (65 Da, Ligand)
- Rna (207-mer) (66 kDa, RNA from Firmicutes bacterium AM43-11BH)
Cryo-EM structure of a CRISPR effector in complex with regulator
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7zol
Q-score: 0.434
Ekundayo B, Torre D, Beckert B, Nazarov S, Myasnikov A, Stahlberg H, Ni D
Nat Struct Mol Biol (2023) 30 pp. 135-139 [ DOI: doi:10.1038/s41594-022-00894-5 Pubmed: 36471056 ]
- Grna (12 kDa, RNA from Desulfonema magnum)
- Zinc ion (65 Da, Ligand)
- Tpr-chat (17 kDa, Protein from Desulfonema magnum)
- Cas7-11 with trp-chat-ntd (220 kDa, Complex from Desulfonema magnum)
- Cas7-11 (207 kDa, Protein from Desulfonema magnum)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6ny2
Q-score: 0.472
Liu JJ, Orlova N, Oakes BL, Ma E, Spinner HB, Baney KLM, Chuck J, Tan D, Knott GJ, Harrington LB, Al-Shayeb B, Wagner A, Brotzmann J, Staahl BT, Taylor KL, Desmarais J, Nogales E, Doudna JA
Nature (2019) 566 pp. 218-223 [ DOI: doi:10.1038/s41586-019-0908-x Pubmed: 30718774 ]
- Casx-grna-dna(45bp) state i (Complex from Deltaproteobacteria)
- Casx (113 kDa, Protein from Deltaproteobacteria bacterium RIFCSPLOWO2 12 FULL 43 16)
- Dna (35-mer) (10 kDa, DNA from Deltaproteobacteria)
- Dna (35-mer) (10 kDa, DNA from Deltaproteobacteria)
- Rna (112-mer) (35 kDa, RNA from Deltaproteobacteria)