Vaccine elicited Fab C968.180 with influenza H10 JD13 HA trimer
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9bu6
Q-score: 0.489
Mantus GE, Chopde AJ, Gorman J, Cominsky LY, Ourahmane A, Creanga A, Shimberg GD, Gillespie RA, Van Wazer DJ, Zhou T, Gajjala SR, Williams C, Maestle E, Reed DS, Serebryannyy L, Costner P, Holman L, Casazza JP, Koup RA, Dropulic LK, Kwong PD, McDermott AB, Kanekiyo M, Andrews SF
Sci Transl Med (2025) 17 pp. eadr8373-eadr8373 [ DOI: doi:10.1126/scitranslmed.adr8373 Pubmed: 39742506 ]
- Vaccine elicited fab c968.180 with influenza h10 jd13 ha trimer (Complex from Influenza A virus)
- Fab c968.180 light chain (11 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 (26 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 (35 kDa, Protein from Influenza A virus)
- Fab c968.180 heavy chain (14 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Vaccine elicited Fab c115.131 with influenza H10 JD13 HA trimer
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 9bu8
Q-score: 0.414
Mantus GE, Chopde AJ, Gorman J, Cominsky LY, Ourahmane A, Creanga A, Shimberg GD, Gillespie RA, Van Wazer DJ, Zhou T, Gajjala SR, Williams C, Maestle E, Reed DS, Serebryannyy L, Costner P, Holman L, Casazza JP, Koup RA, Dropulic LK, Kwong PD, McDermott AB, Kanekiyo M, Andrews SF
Sci Transl Med (2025) 17 pp. eadr8373-eadr8373 [ DOI: doi:10.1126/scitranslmed.adr8373 Pubmed: 39742506 ]
- Vaccine elicited fab c115.131 with influenza h10 jd13 ha trimer (Complex from Influenza A virus)
- Hemagglutinin ha2 (26 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 (35 kDa, Protein from Influenza A virus)
- Fab c115.131 light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab c115.131 heavy chain (13 kDa, Protein from Homo sapiens)
A3R-Gi complex bound to adenosine
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8yh2
Q-score: 0.379
Oshima HS, Ogawa A, Sano FK, Akasaka H, Kawakami T, Iwama A, Okamoto HH, Nagiri C, Wei FY, Shihoya W, Nureki O
Nat Commun (2024) 15 pp. 9294-9294 [ Pubmed: 39511145 DOI: doi:10.1038/s41467-024-53473-1 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera (48 kDa, Protein from Homo sapiens)
- Adenosine (267 Da, Ligand)
- Scfv16 (27 kDa, Protein from Mus musculus)
- Hemagglutinin,adenosine receptor a3,gfp chimera (88 kDa, Protein from Human orthopneumovirus)
- A3r-gi complex bound to adenosine (Complex from Ovis aries)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Rattus rattus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8yh3
Q-score: 0.323
Oshima HS, Ogawa A, Sano FK, Akasaka H, Kawakami T, Iwama A, Okamoto HH, Nagiri C, Wei FY, Shihoya W, Nureki O
Nat Commun (2024) 15 pp. 9294-9294 [ Pubmed: 39511145 DOI: doi:10.1038/s41467-024-53473-1 ]
- A3r-gi complex bound to m6a (Complex from Ovis aries)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera (48 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Rattus rattus)
- Scfv16 (27 kDa, Protein from Mus musculus)
- N-methyladenosine (281 Da, Ligand)
- Hemagglutinin,adenosine receptor a3,gfp chimera (88 kDa, Protein from human respiratory syncytial virus)
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 8yh5
Q-score: 0.326
Oshima HS, Ogawa A, Sano FK, Akasaka H, Kawakami T, Iwama A, Okamoto HH, Nagiri C, Wei FY, Shihoya W, Nureki O
Nat Commun (2024) 15 pp. 9294-9294 [ Pubmed: 39511145 DOI: doi:10.1038/s41467-024-53473-1 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera (48 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Rattus rattus)
- A3r-gi complex bound to i6a (Complex from Ovis aries)
- Scfv16 (27 kDa, Protein from Mus musculus)
- N-(3-methylbut-2-en-1-yl)adenosine (335 Da, Ligand)
- Hemagglutinin,adenosine receptor a3,gfp chimera (88 kDa, Protein from human respiratory syncytial virus)
A3R-Gi complex bound to namodenoson
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8yh6
Q-score: 0.275
Oshima HS, Ogawa A, Sano FK, Akasaka H, Kawakami T, Iwama A, Okamoto HH, Nagiri C, Wei FY, Shihoya W, Nureki O
Nat Commun (2024) 15 pp. 9294-9294 [ Pubmed: 39511145 DOI: doi:10.1038/s41467-024-53473-1 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2,guanine nucleotide-binding protein g(i) subunit alpha-1 chimera (48 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Rattus rattus)
- Scfv16 (27 kDa, Protein from Mus musculus)
- Namodenoson (544 Da, Ligand)
- A3r-gi complex bound to namodenoson (Complex from Ovis aries)
- Hemagglutinin,adenosine receptor a3,gfp chimera (88 kDa, Protein from human respiratory syncytial virus)
CryoEM structure of A/Perth/16/2009 H3 in complex with flu HA central stem VH1-18 antibody UCA6
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ut3
Q-score: 0.58
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ Pubmed: 38670113 DOI: doi:10.1016/j.immuni.2024.03.022 ]
- Uca6 hc fv (13 kDa, Protein from Homo sapiens)
- An uca6 fab complex with one protomer of a h3 trimer (Complex from Homo sapiens)
- Hemagglutinin (62 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Uca6 lc fv (11 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ut4
Q-score: 0.433
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ Pubmed: 38670113 DOI: doi:10.1016/j.immuni.2024.03.022 ]
- Hemagglutinin ha2 chain (28 kDa, Protein from Influenza A virus)
- 09-1b12 fab (Complex from Homo sapiens)
- An 09-1b12 fab complex with one protomer of a h1 trimer (Complex from Influenza A virus)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- 09-1b12 lc fv (12 kDa, Protein from Homo sapiens)
- 09-1b12 hc fv (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ut5
Q-score: 0.439
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ Pubmed: 38670113 DOI: doi:10.1016/j.immuni.2024.03.022 ]
- Hemagglutinin ha2 chain (28 kDa, Protein from Influenza A virus)
- Uca6_n55t hc fv (13 kDa, Protein from Homo sapiens)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- An uca6 fab complex with one protomer of a h3 trimer (Complex from Homo sapiens)
- Uca6_n55t lc fv (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7x6l
Q-score: 0.167
Sun X, Liu C, Lu X, Ling Z, Yi C, Zhang Z, Li Z, Jin M, Wang W, Tang S, Wang F, Wang F, Wangmo S, Chen S, Li L, Ma L, Zhang Y, Yang Z, Dong X, Qian Z, Ding J, Wang D, Cong Y, Sun B
Nat Commun (2022) 13 pp. 2378-2378 [ Pubmed: 35501328 DOI: doi:10.1038/s41467-022-29950-w ]
- The light chain of the antibody 12 fab (23 kDa, Protein from Homo sapiens)
- Hemagglutinin (20 kDa, Protein from Influenza A virus)
- Heavy chain of antibody 12 fab (24 kDa, Protein from Homo sapiens)
- Cryo-em structure of h3 hemagglutinin from a/hongkong/01/1968 in complex with a neutralizing antibody 28-12 (Complex from Influenza A virus)
- Hemagglutinin (36 kDa, Protein from Influenza A virus (A/Hong Kong/1/1968(H3N2)))