H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting 1-1-1F05
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8tp2
Q-score: 0.541
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- H2 hemagglutinin (a/singapore/1/1957) in complex with rbs-targeting fab 1-1-1f05 (Complex from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Light chain of fab 1-1-1f05 (11 kDa, Protein from Homo sapiens)
- Heavy chain of fab 1-1-1f05 (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin (57 kDa, Protein from Homo sapiens)
H1 hemagglutinin (NC99) in complex with RBS-targeting Fab 1-1-1F05
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8tp3
Q-score: 0.38
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Light chain of fab 1-1-1f05 (11 kDa, Protein from Homo sapiens)
- Heavy chain of fab 1-1-1f05 (13 kDa, Protein from Homo sapiens)
- H1 hemagglutinin (nc99) in complex with sa-targeting fab 1-1-1f05 (Complex from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Hemagglutinin ha1 chain (38 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
H1 hemagglutinin (NC99) in complex with RBS-targeting Fab 1-1-1E04
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8tp5
Q-score: 0.505
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- Hemagglutinin ha1 chain (35 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Hemagglutinin ha2 chain (19 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- H1 hemagglutinin (nc99) in complex with rbs-targeting fab 1-1-1e04 (Complex from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of fab 1-1-1e04 (11 kDa, Protein from Homo sapiens)
- Heavy chain of fab 1-1-1e04 (14 kDa, Protein from Homo sapiens)
H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting Fab 4-1-1E02
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8tp6
Q-score: 0.475
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- H2 hemagglutinin (a/singapore/1/1957) in complex with rbs-targeting fab 4-1-1e02 (Complex from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Hemagglutinin (56 kDa, Protein from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Light chain of 4-1-1e02 fab (11 kDa, Protein from Homo sapiens)
- Heavy chain of 4-1-1e02 fab (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
H2 hemagglutinin (A/Singapore/1/1957) in complex with Sa-targeting Fab 4-1-1G03
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8tp7
Q-score: 0.573
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- H2 hemagglutinin (a/singapore/1/1957) in complex with sa-targeting fab 4-1-1g03 (Complex from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Hemagglutinin (63 kDa, Protein from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Heavy chain of monoclonal antibody 4-1-1g03 (13 kDa, Protein from Homo sapiens)
- Light chain of monoclonal antibody 4-1-1g03 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
H2 hemagglutinin (A/Singapore/1/1957) in complex with medial-junction-targeting Fab 2-2-1G06
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8tp9
Q-score: 0.476
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- H2 hemagglutinin (a/singapore/1/1957) in complex with medial-junction-targeting fab 2-2-1g06 (Complex from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Hemagglutinin (57 kDa, Protein from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Heavy chain of fab 2-2-1g06 (14 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of fab 2-2-1g06 (11 kDa, Protein from Homo sapiens)
H1 hemagglutinin (NC99) in complex with medial-junction-targeting Fab 2-2-1G06
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8tpa
Q-score: 0.524
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Heavy chain of fab 2-2-1g06 (14 kDa, Protein from Homo sapiens)
- H1 hemagglutinin (nc99) in complex with medial-junction-targeting fab 2-2-1g06 (Complex from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Hemagglutinin ha1 chain (38 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Light chain of fab 2-2-1g06 (11 kDa, Protein from Homo sapiens)
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 8d21
Q-score: 0.395
Andrews SF, Cominsky LY, Shimberg GD, Gillespie RA, Gorman J, Raab JE, Brand J, Creanga A, Gajjala SR, Narpala S, Cheung CSF, Harris DR, Zhou T, Gordon I, Holman L, Mendoza F, Houser KV, Chen GL, Mascola JR, Graham BS, Kwong PD, Widge A, Dropulic LK, Ledgerwood JE, Kanekiyo M, McDermott AB
Sci Transl Med (2023) 15 pp. eade4976-eade4976 [ DOI: doi:10.1126/scitranslmed.ade4976 Pubmed: 37075126 ]
- 1b06 light chain (11 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus)
- 1b06 heavy chain (13 kDa, Protein from Homo sapiens)
- Cryo-em structure of the vrc321 clinical trial, vaccine-elicited, human antibody 1b06 in complex with a stabilized nc99 ha trimer (Complex)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 1b06 fab with nc99 ha trimer (Complex from Influenza A virus)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7yhk
Q-score: 0.556
Li T, Chen J, Zheng Q, Xue W, Zhang L, Rong R, Zhang S, Wang Q, Hong M, Zhang Y, Cui L, He M, Lu Z, Zhang Z, Chi X, Li J, Huang Y, Wang H, Tang J, Ying D, Zhou L, Wang Y, Yu H, Zhang J, Gu Y, Chen Y, Li S, Xia N
Nat Commun (2022) 13 pp. 5182-5182 [ Pubmed: 36056024 DOI: doi:10.1038/s41467-022-32926-5 ]
- Neutralizing antibody 12h5 (Complex from Mus musculus)
- Hemagglutinin (62 kDa, Protein from Influenza A virus (A/Beijing/262/1995(H1N1)))
- Ha trimer of a/beijing/262/1995(h1n1) (Complex from Influenza A virus (A/Beijing/262/1995(H1N1)))
- 12h5 heavy chain (12 kDa, Protein from Mus musculus)
- 12h5 light chain (12 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cryo-em structure of the ha trimer of a/beijing/262/1995(h1n1) in complex with neutralizing antibody 12h5 (Complex)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7x6l
Q-score: 0.167
Sun X, Liu C, Lu X, Ling Z, Yi C, Zhang Z, Li Z, Jin M, Wang W, Tang S, Wang F, Wang F, Wangmo S, Chen S, Li L, Ma L, Zhang Y, Yang Z, Dong X, Qian Z, Ding J, Wang D, Cong Y, Sun B
Nat Commun (2022) 13 pp. 2378-2378 [ Pubmed: 35501328 DOI: doi:10.1038/s41467-022-29950-w ]
- The light chain of the antibody 12 fab (23 kDa, Protein from Homo sapiens)
- Hemagglutinin (20 kDa, Protein from Influenza A virus)
- Heavy chain of antibody 12 fab (24 kDa, Protein from Homo sapiens)
- Cryo-em structure of h3 hemagglutinin from a/hongkong/01/1968 in complex with a neutralizing antibody 28-12 (Complex from Influenza A virus)
- Hemagglutinin (36 kDa, Protein from Influenza A virus (A/Hong Kong/1/1968(H3N2)))