structure of LIN28b nucleosome bound 3 OCT4
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7u0g
Q-score: 0.531
Guan R, Lian T, Zhou BR, Wheeler D, Bai Y
Mol Cell (2023) 83 pp. 1970-1982.e6 [ Pubmed: 37327775 DOI: doi:10.1016/j.molcel.2023.05.030 ]
- Complex of nucleosome bound to three oct-4s (Complex from Homo sapiens)
- Single-chain variable fragment (29 kDa, Protein from Mus musculus)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (162-mer) (49 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Maltodextrin-binding protein,pou domain, class 5, transcription factor 1 (61 kDa, Protein from Homo sapiens)
- Histone h2a type 2-c (14 kDa, Protein from Homo sapiens)
- Dna (162-mer) (50 kDa, DNA from Homo sapiens)
Structure of LIN28b nucleosome bound 2 OCT4
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7u0i
Q-score: 0.548
Guan R, Lian T, Zhou BR, Wheeler D, Bai Y
Mol Cell (2023) 83 pp. 1970-1982.e6 [ Pubmed: 37327775 DOI: doi:10.1016/j.molcel.2023.05.030 ]
- Single-chain variable fragment (29 kDa, Protein from Mus musculus)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (162-mer) (49 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Maltodextrin-binding protein,pou domain, class 5, transcription factor 1 (61 kDa, Protein from Homo sapiens)
- Histone h2a type 2-c (14 kDa, Protein from Homo sapiens)
- Dna (162-mer) (50 kDa, DNA from Homo sapiens)
- Complex of nucleosome bound to two oct-4s (Complex from Homo sapiens)
Structure of 162bp LIN28b nucleosome
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7u0j
Q-score: 0.568
Guan R, Lian T, Zhou BR, Wheeler D, Bai Y
Mol Cell (2023) 83 pp. 1970-1982.e6 [ Pubmed: 37327775 DOI: doi:10.1016/j.molcel.2023.05.030 ]
- Single-chain variable fragment (29 kDa, Protein from Mus musculus)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Native nucleosome (Complex from Homo sapiens)
- Dna (162-mer) (49 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 2-c (14 kDa, Protein from Homo sapiens)
- Dna (162-mer) (50 kDa, DNA from Homo sapiens)
Structure of 187bp LIN28b nucleosome with site 0 mutation
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8dk5
Q-score: 0.535
Guan R, Lian T, Zhou BR, Wheeler D, Bai Y
Mol Cell (2023) 83 pp. 1970-1982.e6 [ Pubmed: 37327775 DOI: doi:10.1016/j.molcel.2023.05.030 ]
- Single-chain variable fragment (29 kDa, Protein from Mus musculus)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (187-mer) (57 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- 187bp free nucleosome (Complex from Homo sapiens)
- Dna (187-mer) (58 kDa, DNA from Homo sapiens)
- Histone h2a type 2-c (14 kDa, Protein from Homo sapiens)
High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8sps
Q-score: 0.434
Guan R, Lian T, Zhou BR, Wheeler D, Bai Y
Mol Cell (2023) 83 pp. 1970-1982.e6 [ Pubmed: 37327775 DOI: doi:10.1016/j.molcel.2023.05.030 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Maltodextrin-binding protein,pou domain, class 5, transcription factor 1 (61 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (168-mer) (51 kDa, DNA from Homo sapiens)
- Dna (168-mer) (52 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Complex of esrrb nucleosome bound to oct4 (Complex from Homo sapiens)
- Scfv (29 kDa, Protein from Escherichia coli)
- Histone h2a type 2-c (14 kDa, Protein from Homo sapiens)
Structure of ESRRB nucleosome bound OCT4 at site c
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8spu
Q-score: 0.496
Guan R, Lian T, Zhou BR, Wheeler D, Bai Y
Mol Cell (2023) 83 pp. 1970-1982.e6 [ Pubmed: 37327775 DOI: doi:10.1016/j.molcel.2023.05.030 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Maltodextrin-binding protein,pou domain, class 5, transcription factor 1 (61 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (168-mer) (51 kDa, DNA from Homo sapiens)
- Dna (168-mer) (52 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Complex of esrrb nucleosome bound to oct4 (Complex from Homo sapiens)
- Scfv (29 kDa, Protein from Escherichia coli)
- Histone h2a type 2-c (14 kDa, Protein from Homo sapiens)