Structure of CyclinB1 N-terminus bound to the NCP
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9fh9
Q-score: 0.534
Cirillo L, Young R, Veerapathiran S, Roberti A, Martin M, Abubacar A, Perosa C, Coates C, Muhammad R, Roumeliotis TI, Choudhary JS, Alfieri C, Pines J
EMBO J (2024) 43 pp. 4324-4355 [ DOI: doi:10.1038/s44318-024-00194-2 Pubmed: 39143240 ]
- Cyclin b1 ntd bound to the acidic path of the ncp (Complex from Homo sapiens)
- Dna (145-mer) (45 kDa, DNA from Homo sapiens)
- Dna (145-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 3 (14 kDa, Protein from Homo sapiens)
- G2/mitotic-specific cyclin-b1 (2 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Water (18 Da, Ligand)
Cryo-EM structure of an asymmetric nucleosome (10-N-0) from a Glacios/Falcon3EC
Bacic L, Gaullier G, Sabantsev A, Lehmann LC, Brackmann K, Dimakou D, Halic M, Hewitt G, Boulton SJ, Deindl S
eLife (2021) 10 [ DOI: doi:10.7554/eLife.71420 Pubmed: 34486521 ]
- Histone h2a type 1 (Protein from Xenopus laevis)
- Histone h2b 1.1 (Protein from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- Widom 601 sequence with 10 additional bp on the strong side (DNA from synthetic construct)
- 601 nucleosome with 10 additional bp (205 kDa, Complex)
- Histone h3.2 (Protein from Xenopus laevis)
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8osl
Q-score: 0.177
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schubeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thoma NH
Nature (2023) 619 pp. 385-393 [ Pubmed: 37407816 DOI: doi:10.1038/s41586-023-06282-3 ]
- Clock-bmal1 heterodimer (Complex from Mus musculus)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Circadian locomoter output cycles protein kaput (43 kDa, Protein from Mus musculus)
- Basic helix-loop-helix arnt-like protein 1 (43 kDa, Protein from Mus musculus)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Nucleosome core particle (Complex)
- Dna (147-mer) (45 kDa, DNA from Homo sapiens)
- Clock-bmal1 bound to a nucleosome at shl -6.2 (Complex)
- Nucleosomal dna (Complex from synthetic construct)
- Histone octamer (Complex from Homo sapiens)
CHD7 N-CRD and nucleosome(+40bp) complex
Lee E, Kang C, Purhonen P, Hebert H, Bouazoune K, Hohng S, Song JJ
J Mol Biol (2021) 433 pp. 167114-167114 [ Pubmed: 34161779 DOI: doi:10.1016/j.jmb.2021.167114 ]
- Histone h3 (Macromolecule from Xenopus laevis)
- Dna (Complex)
- Cryo em structure of chd7 n-crd bound to the nucleosome (Complex)
- Histone h2b (Macromolecule from Xenopus laevis)
- Widom 601 dna with extra 40bp of vector sequence (RNA from synthetic construct)
- Chd7 n-crd (Complex from Homo sapiens)
- Histone h2a (Macromolecule from Xenopus laevis)
- Histone (Complex from Xenopus laevis)
- Histone h4 (Macromolecule from Xenopus laevis)
- Chd7 n-crd (Macromolecule from Homo sapiens)
Structure of human cGAS bound to the nucleosome (focused refinement of cGAS-NCP subcomplex)
Pathare GR, Decout A, Gluck S, Cavadini S, Makasheva K, Hovius R, Kempf G, Weiss J, Kozicka Z, Guey B, Melenec P, Fierz B, Thoma NH, Ablasser A
Nature (2020) 587 pp. 668-672 [ Pubmed: 32911482 DOI: doi:10.1038/s41586-020-2750-6 ]
- Cyclic gmp-amp synthase (Protein from Homo sapiens)
- Cryo em structure of cgas-ncp1 complex (Complex from Homo sapiens)
- Cryo em structure of cgas-ncp1 complex (240 kDa, Complex)
- Dna (153-mer) (RNA from Homo sapiens)
- Histone h2b type 1-k (Protein from Homo sapiens)
- Histone h2a type 2-c (Protein from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Histone h3.2 (Protein from Homo sapiens)
- Dna (Complex from Homo sapiens)
- Dna (153-mer) (Protein from Homo sapiens)
Structure of human cGAS bound to the nucleosome
Pathare GR, Decout A, Gluck S, Cavadini S, Makasheva K, Hovius R, Kempf G, Weiss J, Kozicka Z, Guey B, Melenec P, Fierz B, Thoma NH, Ablasser A
Nature (2020) 587 pp. 668-672 [ Pubmed: 32911482 DOI: doi:10.1038/s41586-020-2750-6 ]
- Cryo em structure of cgas-ncp1 complex (Complex from Homo sapiens)
- Cryo em structure of cgas-ncp1 complex (240 kDa, Complex)
- Dna (153-mer) (RNA from Homo sapiens)
- Histone h2b type 1-k (Protein from Homo sapiens)
- Histone h2a type 2-c (Protein from Homo sapiens)
- Cyclic gmp-amp synthase (RNA from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Histone h3.2 (Protein from Homo sapiens)
- Dna (Complex from Homo sapiens)