EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"histones" AND author_orcid:"0000-0002-8776-2096" AND author_name:"D"

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EMD-10406

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OCT4-SOX2-bound nucleosome - SHL-6

Release date: May 6, 2020
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6t90
Q-score: 0.451

Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schubeler D, Thoma NH

Science (2020) 368 pp. 1460-1465 [ DOI: doi:10.1126/science.abb0074 Pubmed: 32327602 ]

Sample:

Histones (Complex from Homo sapiens)
Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
Histone h3.1 (15 kDa, Protein from Homo sapiens)
Pentanedial (100 Da, Ligand)
Ternary complex of oct4-sox2 and shl-6 nucleosome (Complex)
Sox2 (Complex from Homo sapiens)
Dna (146-mer) (46 kDa, DNA from synthetic construct)
Dna (146-mer) (45 kDa, DNA from synthetic construct)
Green fluorescent protein,pou domain, class 5, transcription factor 1 (70 kDa, Protein from Homo sapiens)
Histone h4 (11 kDa, Protein from Homo sapiens)
G protein/gfp fusion protein,pou domain, class 5, transcription factor 1 (oct4) (Complex from Homo sapiens)
Transcription factor sox-2 (12 kDa, Protein from Homo sapiens)
Dna (Complex from synthetic construct)
Histone h3.1 (15 kDa, Protein from Homo sapiens)
Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)

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EMD-10408

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Nucleosome with OCT4-SOX2 motif at SHL-6

Release date: May 6, 2020
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6t93
Q-score: 0.419

Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schubeler D, Thoma NH

Science (2020) 368 pp. 1460-1465 [ DOI: doi:10.1126/science.abb0074 Pubmed: 32327602 ]

Sample:

Dna (153-mer) (46 kDa, DNA from synthetic construct)
Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
Histones (Complex from Homo sapiens)
Histone h4 (11 kDa, Protein from Homo sapiens)
Ternary complex of oct4-sox2 and shl+6 nucleosome (Complex)
Dna (Complex from synthetic construct)
Histone h3.1 (15 kDa, Protein from Homo sapiens)
Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Dna (153-mer) (47 kDa, DNA from synthetic construct)

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EMD-10864

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OCT4-SOX2-bound nucleosome - SHL+6

Release date: May 6, 2020
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6yov
Q-score: 0.35

Michael AK, Grand RS, Isbel L, Cavadini S, Kozicka Z, Kempf G, Bunker RD, Schenk AD, Graff-Meyer A, Pathare GR, Weiss J, Matsumoto S, Burger L, Schubeler D, Thoma NH

Science (2020) 368 pp. 1460-1465 [ DOI: doi:10.1126/science.abb0074 Pubmed: 32327602 ]

Sample:

Histones (Complex from Homo sapiens)
Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
Histone h3.1 (15 kDa, Protein from Homo sapiens)
Pentanedial (100 Da, Ligand)
Sox2 (Complex from Homo sapiens)
Histone h4 (11 kDa, Protein from Homo sapiens)
Green fluorescent protein,pou domain, class 5, transcription factor 1 (Complex from Homo sapiens)
Ternary complex of oct4-sox2 and shl+6 nucleosome (Complex)
Transcription factor sox-2 (12 kDa, Protein from Homo sapiens)
Dna (142-mer) (92 kDa, DNA from synthetic construct)
Dna (Complex from synthetic construct)
Histone h3.1 (15 kDa, Protein from Homo sapiens)
Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Green fluorescent protein,pou domain, class 5, transcription factor 1 (69 kDa, Protein from Homo sapiens)
Histone h4 (11 kDa, Protein from Homo sapiens)

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EMD-4762

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Cryo-EM structure of NCP-6-4PP(-1)-UV-DDB

Release date: June 12, 2019
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6r8y
Q-score: 0.313

Matsumoto S, Cavadini S, Bunker RD, Grand RS, Potenza A, Rabl J, Yamamoto J, Schenk AD, Schubeler D, Iwai S, Sugasawa K, Kurumizaka H, Thoma NH

Nature (2019) 571 pp. 79-84 [ DOI: doi:10.1038/s41586-019-1259-3 Pubmed: 31142837 ]

Sample:

Dna damage-binding proteins (Complex from Homo sapiens)
Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
Histone h4 (11 kDa, Protein from Homo sapiens)
Human alpha-satellite dna (145-mer) with a 6-4pp at positions 95-96 (44 kDa, DNA from Homo sapiens)
Histones (Complex from Homo sapiens)
Dna damage-binding protein 2 (48 kDa, Protein from Homo sapiens)
Dna (Complex from Homo sapiens)
Human alpha-satellite dna (145-mer) (44 kDa, DNA from Homo sapiens)
Dna damage-binding protein 1 (127 kDa, Protein from Homo sapiens)
Uv-ddb bound to a 6-4pp containing nucleosome (199 kDa, Complex)
Histone h4 (11 kDa, Protein from Homo sapiens)
Histone h3.1 (15 kDa, Protein from Homo sapiens)
Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: