Overall map of ncPRC1RYBP bound to doubly modified H2AK119Ub nucleosome
Lopez VG, Valencia-Sanchez MI, Abini-Agbomson S, Thomas JF, Lee R, De Ioannes P, Sosa BA, Armache JP, Armache KJ
Nature (2024) 636 pp. 755-761 [ DOI: doi:10.1038/s41586-024-08183-5 Pubmed: 39537923 ]
- Histones octamer (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Histone h2a (Complex from Xenopus laevis)
- Ring1 and yy1-binding protein (Complex from Homo sapiens)
- Dna (187-mer) (DNA from synthetic construct)
- Histone h3.2 (Protein from Xenopus laevis)
- Histone h2b 1.1 (Complex from Xenopus laevis)
- E3 ubiquitin-protein ligase ring2, ubiquitin-conjugating enzyme e2 d3 (Protein from Homo sapiens)
- E3 ubiquitin-protein ligase ring2, ubiquitin-conjugating enzyme e2 d3 (Complex from Homo sapiens)
- Dna (187-mer) (Complex from synthetic construct)
- Histone h2b 1.1 (Protein from Xenopus laevis)
- Ncprc1-rybp (Complex from Homo sapiens)
- Ubiquitin (Protein from Homo sapiens)
- Overall map of ncprc1rybp bound to doubly modified h2ak119ub nucleosome (Complex from Homo sapiens)
- Histone h2a (Protein from Xenopus laevis)
- Ring1 and yy1-binding protein (Protein from Homo sapiens)
- Polycomb complex protein bmi-1 (Protein from Homo sapiens)
- Histone h4 (Protein from Xenopus laevis)
- Ubiquitin (Complex from Homo sapiens)
- Histone h3.2 (Complex from Xenopus laevis)
- Polycomb complex protein bmi-1 (Complex from Homo sapiens)
cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7m1x
Q-score: 0.391
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ Pubmed: 34643712 DOI: doi:10.1093/nar/gkab907 ]
- Histone h3 (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Dna (136-mer) (45 kDa, DNA from unidentified)
- Dna (136-mer) (45 kDa, DNA from unidentified)
- Nucleosome core particle containing variant h2a.z and canonical core histones (Complex)
- Histone variant h2a.z (Complex from Mus musculus)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a.z (13 kDa, Protein from Mus musculus)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (136-mer) (Complex from unidentified)
- Histone h2b (Complex from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
cryo-EM density map of chromatin fiber containing canonical histones and 167-bp 601 DNA
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ Pubmed: 34643712 DOI: doi:10.1093/nar/gkab907 ]
- In-vitro reconstituted chromatin fiber containing canonical histones and twelve tandem repeats of 167-bp 601 windom sequence (Complex from Xenopus laevis)
- Histone h2b (Protein from Xenopus laevis)
- 12x 167bp 601 dna (DNA from unidentified)
- Histone h3 (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Histones h2a (Complex from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- 12x167bp 601 dna (Complex from unidentified)
- Histone h3 (Protein from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- Histone h2a (Protein from Xenopus laevis)
cryo-EM density map of canonical nucleosome
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ Pubmed: 34643712 DOI: doi:10.1093/nar/gkab907 ]
- Histone h2b (Protein from Xenopus laevis)
- Histone h3 (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- 167-bp 601 widom dna sequence (DNA from unidentified)
- Histones h2a (Complex from Xenopus laevis)
- Histone h4 (Protein from Xenopus laevis)
- 167-bp 601 widom dna sequence (Complex from unidentified)
- Nucleosome containing canonical histones h2a, h2b, h3 and h4 (Complex from Xenopus laevis)
- Histone h3 (Protein from Xenopus laevis)
- Histone h2b (Complex from Xenopus laevis)
- Histone h2a (Protein from Xenopus laevis)