Trinucleosome of the 4x177 nucleosome array containing H1
Resolution: 11.0 Å
EM Method: Single-particle
Fitted PDBs: 7pf0
Q-score: 0.101
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Dna (563-mer) (167 kDa, DNA from synthetic construct)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Trinucleosome from 4x187 nucleosome array (Complex)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Dna (563-mer) (166 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Nucleosome stack of the 4x187 nucleosome array containing H1
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7pf2
Q-score: 0.217
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Nucleosome stack from 4x187 nucleosome array (Complex)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Dna (541-mer) (232 kDa, DNA from synthetic construct)
- Histones (Complex from Homo sapiens)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
- Dna (541-mer) (230 kDa, DNA from synthetic construct)
Nucleosome 3 of the 4x187 nucleosome array containing H1
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7pf4
Q-score: 0.274
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Nucleosome 3 from 4x187 nucleosome array (Complex)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Nucleosome 2 of the 4x187 nucleosome array containing H1
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7pf5
Q-score: 0.329
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Nucleosome 2 from 4x187 nucleosome array (Complex)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Nucleosome 1 of the 4x187 nucleosome array containing H1
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7pf6
Q-score: 0.27
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Nucleosome 1 from 4x187 nucleosome array (Complex)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Nucleosome 1 of the 4x197 nucleosome array containing H1
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7pfd
Q-score: 0.208
Dombrowski M, Engeholm M, Dienemann C, Dodonova S, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 493-501 [ DOI: doi:10.1038/s41594-022-00768-w Pubmed: 35581345 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (16 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Histone h2b type 1-k (13 kDa, Protein from Homo sapiens)
- Dna (172-mer) (53 kDa, DNA from synthetic construct)
- Histone h1.4 (21 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Nucleosome 1 from 4x197 nucleosome array (Complex)
- Dna (172-mer) (52 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Homo sapiens)
Cryo-EM map of human telomerase-DNA-TPP1 complex (sharpened)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7qxa
Q-score: 0.379
Sekne Z, Ghanim GE, van Roon AM, Nguyen THD
Science (2022) 375 pp. 1173-1176 [ Pubmed: 35201900 DOI: doi:10.1126/science.abn6840 ]
- Telomeric dna (Complex from Homo sapiens)
- Telomerase reverse transcriptase (127 kDa, Protein from Homo sapiens)
- Histone h2b (18 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Tpp1 (Complex from Homo sapiens)
- Complex of telomeric dna-bound human telomerase with tpp1 (Complex)
- Adrenocortical dysplasia homolog (mouse), isoform cra_a (49 kDa, Protein from Homo sapiens)
- Telomerase reverse transcriptase and telomeric rna (Complex from Homo sapiens)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Human telomerase rna (145 kDa, RNA from Homo sapiens)
- Telomeric dna (9 kDa, DNA from Homo sapiens)
Cryo-EM map of human telomerase-DNA-TPP1-POT1 complex (sharpened map)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7qxb
Q-score: 0.278
Sekne Z, Ghanim GE, van Roon AM, Nguyen THD
Science (2022) 375 pp. 1173-1176 [ Pubmed: 35201900 DOI: doi:10.1126/science.abn6840 ]
- Telomeric dna (Complex from Homo sapiens)
- Telomerase reverse transcriptase (127 kDa, Protein from Homo sapiens)
- Histone h2b (18 kDa, Protein from Homo sapiens)
- Histones (Complex from Homo sapiens)
- Complex of telomeric dna-bound human telomerase with tpp1-pot1 (Complex)
- Tpp1-pot1 (Complex from Homo sapiens)
- Adrenocortical dysplasia homolog (mouse), isoform cra_a (49 kDa, Protein from Homo sapiens)
- Telomerase reverse transcriptase and telomeric rna (Complex from Homo sapiens)
- Protection of telomeres protein 1 (71 kDa, Protein from Homo sapiens)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Human telomerase rna (145 kDa, RNA from Homo sapiens)
- Telomeric dna (9 kDa, DNA from Homo sapiens)
cryo-EM Structure of Nucleosome containing mouse histone variant H2A.Z
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7m1x
Q-score: 0.391
Lewis TS, Sokolova V, Jung H, Ng H, Tan D
Nucleic Acids Res (2021) 49 pp. 11379-11391 [ Pubmed: 34643712 DOI: doi:10.1093/nar/gkab907 ]
- Histone h3 (Complex from Xenopus laevis)
- Histone h4 (Complex from Xenopus laevis)
- Dna (136-mer) (45 kDa, DNA from unidentified)
- Dna (136-mer) (45 kDa, DNA from unidentified)
- Nucleosome core particle containing variant h2a.z and canonical core histones (Complex)
- Histone variant h2a.z (Complex from Mus musculus)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a.z (13 kDa, Protein from Mus musculus)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (136-mer) (Complex from unidentified)
- Histone h2b (Complex from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
Active state Dot1 bound to the unacetylated H4 nucleosome
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7k6p
Q-score: 0.473
Valencia-Sanchez MI, De Ioannes P, Wang M, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ
Science (2021) 371 [ DOI: doi:10.1126/science.abc6663 Pubmed: 33479126 ]
- Dna (146-mer) (Complex from synthetic construct)
- Histone-lysine n-methyltransferase, h3 lysine-79 specific (46 kDa, Protein from Saccharomyces cerevisiae)
- S-adenosylmethionine (398 Da, Ligand)
- Dna (146-mer) (44 kDa, DNA from synthetic construct)
- Dna (146-mer) (45 kDa, DNA from synthetic construct)
- Histone h2a type 1 (11 kDa, Protein from Xenopus laevis)
- Histones (Complex from Xenopus laevis)
- Histone-lysine n-methyltransferase, h3 lysine-79 specific (Complex from Saccharomyces cerevisiae)
- Histone h3.2 (11 kDa, Protein from Xenopus laevis)
- Histone h4 (10 kDa, Protein from Xenopus laevis)
- Active state dot1 bound to the unacetylated h4 nucleosome (Complex from Saccharomyces cerevisiae)
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (10 kDa, Protein from Xenopus laevis)
- Polyubiquitin-b (Complex from Homo sapiens)