Baseplate structure of Escherichia phage Mu
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9ki1
Q-score: 0.517
To Be Published
- Tail fiber protein s (55 kDa, Protein from Escherichia phage Mu)
- Baseplate protein gp47 (38 kDa, Protein from Escherichia phage Mu)
- Baseplate hub protein gp44 (41 kDa, Protein from Escherichia phage Mu)
- Escherichia phage mu (Virus from Escherichia phage Mu)
- Calcium ion (40 Da, Ligand)
- Tail sheath protein (53 kDa, Protein from Escherichia phage Mu)
- Tail tube protein (12 kDa, Protein from Escherichia phage Mu)
- Baseplate puncturing device gp45 (21 kDa, Protein from Escherichia phage Mu)
- Probable tape measure protein (73 kDa, Protein from Escherichia phage Mu)
- Baseplate protein gp46 (16 kDa, Protein from Escherichia phage Mu)
- Fe (iii) ion (55 Da, Ligand)
- Baseplate protein gp48 (20 kDa, Protein from Escherichia phage Mu)
- Dna circularization protein n (52 kDa, Protein from Escherichia phage Mu)
Neck and tail of phage 812 virion (composite)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8r69
Q-score: 0.356
Cienikova Z, Novacek J, Siborova M, Popelarova B, Fuzik T, Benesik M, Bardy P, Pantucek R, Plevka P
To Be Published
- Capsid protein (15 kDa, Protein from Staphylococcus phage 812)
- Capsid protein (33 kDa, Protein from Staphylococcus phage 812)
- Major tail sheath protein (64 kDa, Protein from Staphylococcus phage 812)
- Staphylococcus phage 812 (Virus from Staphylococcus phage 812)
- Portal protein (64 kDa, Protein from Staphylococcus phage 812)
- Putative non-cytoplasmic protein (10 kDa, Protein from Staphylococcus phage 812)
- Non-cytoplasmic protein (17 kDa, Protein from Staphylococcus phage 812)
- Zinc ion (65 Da, Ligand)
- Putative neck protein (34 kDa, Protein from Staphylococcus phage 812)
- Baseplate hub assembly protein (31 kDa, Protein from Staphylococcus phage 812)
Neck-tail junction of phage 812 virion (C6)
Resolution: 4.28 Å
EM Method: Single-particle
Fitted PDBs: 8r5g
Q-score: 0.376
Cienikova Z, Novacek J, Siborova M, Popelarova B, Fuzik T, Benesik M, Bardy P, Pantucek R, Plevka P
To Be Published
- Capsid protein (15 kDa, Protein from Staphylococcus phage 812)
- Capsid protein (33 kDa, Protein from Staphylococcus phage 812)
- Putative non-cytoplasmic protein (10 kDa, Protein from Staphylococcus phage 812)
- Staphylococcus phage 812 (Virus from Staphylococcus phage 812)
- Major tail sheath protein (64 kDa, Protein from Staphylococcus phage 812)
- Non-cytoplasmic protein (17 kDa, Protein from Staphylococcus phage 812)
- Zinc ion (65 Da, Ligand)
- Putative neck protein (34 kDa, Protein from Staphylococcus phage 812)
- Baseplate hub assembly protein (31 kDa, Protein from Staphylococcus phage 812)
Pseudomonas phage Pa193 baseplate complex and tail fiber
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9b45
Q-score: 0.443
Iglesias SM, Hou CD, Reid J, Schauer E, Geier R, Soriaga A, Sim L, Gao L, Whitelegge J, Kyme P, Birx D, Lemire S, Cingolani G
Commun Biol (2024) 7 pp. 1275-1275 [ Pubmed: 39370451 DOI: doi:10.1038/s42003-024-06985-x ]
- Gp47 tail fiber (103 kDa, Protein from Pseudomonas virus Pa193)
- Gp46 baseplate wedge 2 (54 kDa, Protein from Pseudomonas virus Pa193)
- Gp35 sheath initiator (12 kDa, Protein from Pseudomonas virus Pa193)
- Gp42 tail hub (32 kDa, Protein from Pseudomonas virus Pa193)
- Gp41 tape measure protein (94 kDa, Protein from Pseudomonas virus Pa193)
- Gp38 ripcord-1 (20 kDa, Protein from Pseudomonas virus Pa193)
- Pseudomonas virus pa193 (Virus from Pseudomonas virus Pa193)
- Gp45-a baseplate wedge 1 (43 kDa, Protein from Pseudomonas virus Pa193)
- Gp44 tail tip (24 kDa, Protein from Pseudomonas virus Pa193)
- Gp34 helical bundle (12 kDa, Protein from Pseudomonas virus Pa193)
- Gp37 baseplate tube (17 kDa, Protein from Pseudomonas virus Pa193)
- Gp39 ripcord-2 (21 kDa, Protein from Pseudomonas virus Pa193)
Cryo-EM of tail-tip of bacteriophage Chi
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8vjh
Q-score: 0.341
Sonani RR, Esteves NC, Scharf BE, Egelman EH
Structure (2024) 32 pp. 856-865.e3 [ DOI: doi:10.1016/j.str.2024.03.011 Pubmed: 38614087 ]
- Minor tail protein (143 kDa, Protein from Chivirus chi)
- Chivirus chi (Virus from Chivirus chi)
- Distal tail protein (63 kDa, Protein from Chivirus chi)
- Tail tube (40 kDa, Protein from Chivirus chi)
- Baseplate hub 1 protein, gp27 (29 kDa, Protein from Chivirus chi)
- Tape measure (153 kDa, Protein from Chivirus chi)
- Tail assembly protein 1 (8 kDa, Protein from Chivirus chi)
- Fe (iii) ion (55 Da, Ligand)
Resolution: 4.15 Å
EM Method: Single-particle
Fitted PDBs: 8qkh
Q-score: 0.428
Cienikova Z, Novacek J, Siborova M, Popelarova B, Fuzik T, Benesik M, Bardy P, Plevka P
To Be Published
- Capsid protein (33 kDa, Protein from Staphylococcus phage 812)
- Putative non-cytoplasmic protein (10 kDa, Protein from Staphylococcus phage 812)
- Staphylococcus phage 812 (Virus from Staphylococcus phage 812)
- Non-cytoplasmic protein (17 kDa, Protein from Staphylococcus phage 812)
- Zinc ion (65 Da, Ligand)
- Putative neck protein (34 kDa, Protein from Staphylococcus phage 812)
- Baseplate hub assembly protein (31 kDa, Protein from Staphylococcus phage 812)
Neck and tail of phage 812 after tail contraction (composite)
Cienikova Z, Novacek J, Siborova M, Popelarova B, Fuzik T, Benesik M, Bardy P, Plevka P
To Be Published
- Anchor dna reverse strand (120-mer) (37 kDa, DNA from Staphylococcus phage 812)
- Anchor dna forward strand (120-mer) (36 kDa, DNA from Staphylococcus phage 812)
- Capsid protein (15 kDa, Protein from Staphylococcus phage 812)
- Capsid protein (33 kDa, Protein from Staphylococcus phage 812)
- Portal protein (64 kDa, Protein from Staphylococcus phage 812)
- Staphylococcus phage 812 (Virus from Staphylococcus phage 812)
- Major tail sheath protein (64 kDa, Protein from Staphylococcus phage 812)
- Zinc ion (65 Da, Ligand)
- Putative neck protein (34 kDa, Protein from Staphylococcus phage 812)
- Baseplate hub assembly protein (31 kDa, Protein from Staphylococcus phage 812)
Structure of the bacteriophage T5 tail tip complex
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ Pubmed: 39126049 DOI: doi:10.3390/ijms25158479 ]
- Distal tail protein pb9 (22 kDa, Protein from Escherichia phage T5)
- Baseplate tube protein p140 (34 kDa, Protein from Escherichia phage T5)
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Baseplate hub protein pb3 (107 kDa, Protein from Escherichia phage T5)
CryoEM Structure of Diffocin - precontracted - Baseplate - focused refinement on triplex region
Cai X, He Y, Yu I, Imani A, Scholl D, Miller JF, Zhou ZH
Nat Commun (2024) 15 pp. 7057-7057 [ DOI: doi:10.1038/s41467-024-51038-w Pubmed: 39152109 ]
- Tube (cd1364) (16 kDa, Protein from Clostridioides difficile)
- Sheath initiator (cd1370) (16 kDa, Protein from Clostridioides difficile)
- Hub-hydrolase (cd1368) (65 kDa, Protein from Clostridioides difficile)
- Tri-1 (cd1372) (26 kDa, Protein from Clostridioides difficile)
- Tape measure protein (cd1366) (89 kDa, Protein from Clostridioides difficile)
- Spike (cd1369) (12 kDa, Protein from Clostridioides difficile)
- Tube tail (cd1367) (16 kDa, Protein from Clostridioides difficile)
- Diffocin (Complex from Clostridioides difficile)
- Tri-2 (cd1371) (39 kDa, Protein from Clostridioides difficile)
- Sheath (cd1363) (39 kDa, Protein from Clostridioides difficile)
Cyanophage A-1(L) baseplate-initiators
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8kea
Q-score: 0.578
Yu RC, Yang F, Zhang HY, Hou P, Du K, Zhu J, Cui N, Xu X, Chen Y, Li Q, Zhou CZ
Nat Commun (2024) 15 pp. 2654-2654 [ Pubmed: 38531972 DOI: doi:10.1038/s41467-024-47006-z ]
- Central spike (29 kDa, Protein from unclassified Caudoviricetes)
- Wedge protein gp31 (42 kDa, Protein from unclassified Caudoviricetes)
- Tmp (73 kDa, Protein from unclassified Caudoviricetes)
- Hub (98 kDa, Protein from unclassified Caudoviricetes)
- Tube initiator (31 kDa, Protein from unclassified Caudoviricetes)
- Unclassified caudoviricetes (Virus from unclassified Caudoviricetes)
- Baseplate gp16 (17 kDa, Protein from unclassified Caudoviricetes)
- Sheath initiator (12 kDa, Protein from unclassified Caudoviricetes)
- Wedge protein gp32 (22 kDa, Protein from unclassified Caudoviricetes)