Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7qoj
Q-score: 0.562
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
Nature (2023) 617 pp. 409-416 [ Pubmed: 37138077 DOI: doi:10.1038/s41586-023-06019-2 ]
- Bacteroides phage crass001 (Virus from Bacteroides phage crAss001)
- Ring protein 3 gp35 (26 kDa, Protein from Bacteroides phage crAss001)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Ring protein 1 gp43 (27 kDa, Protein from Bacteroides phage crAss001)
- Portal protein gp20 (93 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 4/5 gp34 (26 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein a gp38 (24 kDa, Protein from Bacteroides phage crAss001)
- Tail fiber protein gp22 (92 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein b gp39 (13 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 2 gp40 (26 kDa, Protein from Bacteroides phage crAss001)
- Cargo protein 1 gp45 (90 kDa, Protein from Bacteroides phage crAss001)
Tail assembly of the phicrAss001 virion with C6 symmetry imposed
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7qol
Q-score: 0.525
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
Nature (2023) 617 pp. 409-416 [ Pubmed: 37138077 DOI: doi:10.1038/s41586-023-06019-2 ]
- Bacteroides phage crass001 (Virus from Bacteroides phage crAss001)
- Ring protein 3 gp35 (26 kDa, Protein from Bacteroides phage crAss001)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Ring protein 1 gp43 (27 kDa, Protein from Bacteroides phage crAss001)
- Portal protein gp20 (93 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 4/5 gp34 (26 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein a gp38 (24 kDa, Protein from Bacteroides phage crAss001)
- Muzzle protein gp44 (156 kDa, Protein from Bacteroides phage crAss001)
- Tail fiber protein gp22 (92 kDa, Protein from Bacteroides phage crAss001)
- Muzzle bound helix (1 kDa, Protein from Bacteroides phage crAss001)
- Tail hub protein b gp39 (13 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 2 gp40 (26 kDa, Protein from Bacteroides phage crAss001)
- Cargo protein 1 gp45 (90 kDa, Protein from Bacteroides phage crAss001)
Tail tip of siphophage T5 : tip proteins
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7zhj
Q-score: 0.438
Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C
Sci Adv (2023) 9 pp. eade9674-eade9674 [ DOI: doi:10.1126/sciadv.ade9674 Pubmed: 36961893 ]
- Probable baseplate hub protein (107 kDa, Protein from Escherichia phage T5)
- Pore-forming tail tip protein pb2 (131 kDa, Protein from Escherichia phage T5)
- Minor tail protein (34 kDa, Protein from Escherichia phage T5)
- Tail tube protein (50 kDa, Protein from Escherichia phage T5)
- Distal tail protein (22 kDa, Protein from Escherichia phage T5)
- L-shaped tail fiber protein p132 (15 kDa, Protein from Escherichia phage T5)
- Escherichia virus t5 (1 MDa, Virus from Escherichia virus T5)
Tail tip of siphophage T5 : full complex after interaction with its bacterial receptor FhuA
Resolution: 4.29 Å
EM Method: Single-particle
Fitted PDBs: 7zn2
Q-score: 0.32
Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C
Sci Adv (2023) 9 pp. eade9674-eade9674 [ DOI: doi:10.1126/sciadv.ade9674 Pubmed: 36961893 ]
- Probable baseplate hub protein (107 kDa, Protein from Escherichia phage T5)
- Pore-forming tail tip protein pb2 (131 kDa, Protein from Escherichia phage T5)
- Straight fiber protein pb4 (74 kDa, Protein from Escherichia phage T5)
- Escherichia virus t5 (Virus from Escherichia virus T5)
- Minor tail protein (34 kDa, Protein from Escherichia phage T5)
- Tail tube protein (50 kDa, Protein from Escherichia phage T5)
- Distal tail protein (22 kDa, Protein from Escherichia phage T5)
- L-shaped tail fiber protein p132 (15 kDa, Protein from Escherichia phage T5)
Tail tip of siphophage T5 : full structure
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7zqb
Q-score: 0.357
Linares R, Arnaud CA, Effantin G, Darnault C, Epalle NH, Boeri Erba E, Schoehn G, Breyton C
Sci Adv (2023) 9 pp. eade9674-eade9674 [ DOI: doi:10.1126/sciadv.ade9674 Pubmed: 36961893 ]
- Probable baseplate hub protein (107 kDa, Protein from Escherichia phage T5)
- Pore-forming tail tip protein pb2 (131 kDa, Protein from Escherichia phage T5)
- Escherichia virus t5 (Virus from Escherichia virus T5)
- Minor tail protein (34 kDa, Protein from Escherichia phage T5)
- Probable central straight fiber (74 kDa, Protein from Escherichia phage T5)
- Tail tube protein (50 kDa, Protein from Escherichia phage T5)
- Distal tail protein (22 kDa, Protein from Escherichia phage T5)
- L-shaped tail fiber protein p132 (15 kDa, Protein from Escherichia phage T5)
Cryo-EM structure of the hub of the 28 triskelia mini clathrin coat complex, class 15
Resolution: 10.5 Å
EM Method: Single-particle
Fitted PDBs: 7om8
Q-score: 0.022
Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ
EMBO J (2021) 40 pp. e108795-e108795 [ DOI: doi:10.15252/embj.2021108795 Pubmed: 34487371 ]
- Beta2 appendage domain of ap2 bound to terminal domains beneath the hub of the 28 triskelia mini clathrin coat complex, class 15 (Complex)
- Clathrin heavy chain (33 kDa, Protein from Sus scrofa)
- Clathrin heavy chain (Complex from Sus scrofa)
- Ap-2 complex subunit beta (26 kDa, Protein from Homo sapiens)
- Ap-2 complex subunit beta (Complex from Homo sapiens)