LSU structure derived from the LSU sample of the mitoribosome from T. gondii.
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9g6k
Q-score: 0.482
Wang C, Kassem S, Rocha REO, Sun P, Nguyen TT, Kloehn J, Liu X, Brusini L, Bonavoglia A, Barua S, Boissier F, Lucia Del Cistia M, Peng H, Tang X, Xie F, Wang Z, Vadas O, Suo X, Hashem Y, Soldati-Favre D, Jia Y
Nat Commun (2024) 15 pp. 10689-10689 [ DOI: doi:10.1038/s41467-024-55033-z Pubmed: 39690155 ]
- Large ribosomal subunit protein ml43 (22 kDa, Protein from Toxoplasma gondii)
- Ml175 (8 kDa, Protein from Toxoplasma gondii)
- Bir protein (26 kDa, Protein from Toxoplasma gondii)
- Rna23t (14 kDa, RNA from Toxoplasma gondii)
- Ap2 domain transcription factor ap2iv-1 (19 kDa, Protein from Toxoplasma gondii)
- Rna35 (8 kDa, RNA from Toxoplasma gondii)
- Bl36m (10 kDa, Protein from Toxoplasma gondii)
- Rrm domain-containing protein (47 kDa, Protein from Toxoplasma gondii)
- Rna37 (19 kDa, RNA from Toxoplasma gondii)
- Rna14 (16 kDa, RNA from Toxoplasma gondii)
- Ulr6 (4 kDa, RNA from Toxoplasma gondii)
- Ml181 (5 kDa, Protein from Toxoplasma gondii)
- Ulr3 (8 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul11m (19 kDa, Protein from Toxoplasma gondii)
- Fas1 domain-containing protein (37 kDa, Protein from Toxoplasma gondii)
- Bl19m (43 kDa, Protein from Toxoplasma gondii)
- Rna1 (30 kDa, RNA from Toxoplasma gondii)
- Putative 50s ribosomal protein l3 (34 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein l9, n-terminal domain-containing protein (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal l25 family protein (37 kDa, Protein from Toxoplasma gondii)
- Hect-domain (ubiquitin-transferase) domain-containing protein (25 kDa, Protein from Toxoplasma gondii)
- Ap2 domain transcription factor ap2viib-2 (21 kDa, Protein from Toxoplasma gondii)
- Lsuc (8 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul29m (25 kDa, Protein from Toxoplasma gondii)
- Ml53 (13 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (51 kDa, Protein from Toxoplasma gondii)
- Bl35m (13 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ul24c (25 kDa, Protein from Toxoplasma gondii)
- Rna10 (28 kDa, RNA from Toxoplasma gondii)
- Putative ribosomal protein l28 (33 kDa, Protein from Toxoplasma gondii)
- Rna31 (11 kDa, RNA from Toxoplasma gondii)
- Ml148 (96 kDa, Protein from Toxoplasma gondii)
- Amp-dependent synthetase/ligase domain-containing protein (92 kDa, Protein from Toxoplasma gondii)
- Ml177 (13 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (85 kDa, Protein from Toxoplasma gondii)
- Ulr5 (4 kDa, RNA from Toxoplasma gondii)
- Putative 50s ribosomal protein l16 (20 kDa, Protein from Toxoplasma gondii)
- Ml174 (22 kDa, Protein from Toxoplasma gondii)
- Putative ribosomal protein l20 (14 kDa, Protein from Toxoplasma gondii)
- Ul1m (6 kDa, Protein from Toxoplasma gondii)
- Ml178 (10 kDa, Protein from Toxoplasma gondii)
- Ulr9 (17 kDa, RNA from Toxoplasma gondii)
- Transmembrane protein (31 kDa, Protein from Toxoplasma gondii)
- Bl32m (9 kDa, Protein from Toxoplasma gondii)
- Ml179 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein l15, putative (36 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l33 (14 kDa, Protein from Toxoplasma gondii)
- Ml185 (6 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l17 (29 kDa, Protein from Toxoplasma gondii)
- Ml173 (11 kDa, Protein from Toxoplasma gondii)
- Ssuf (12 kDa, RNA from Toxoplasma gondii)
- Peptidyl-prolyl cis-trans isomerase (26 kDa, Protein from Toxoplasma gondii)
- Rna29 (16 kDa, RNA from Toxoplasma gondii)
- Rna32 (5 kDa, RNA from Toxoplasma gondii)
- Putative 60s ribosomal protein l27 (8 kDa, Protein from Toxoplasma gondii)
- Rna13 (15 kDa, RNA from Toxoplasma gondii)
- Ribosomal l22p/l17e protein (41 kDa, Protein from Toxoplasma gondii)
- Ml180 (13 kDa, Protein from Toxoplasma gondii)
- Ml184 (4 kDa, Protein from Toxoplasma gondii)
- Duf6832 domain-containing protein (55 kDa, Protein from Toxoplasma gondii)
- Ul14m (12 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (43 kDa, Protein from Toxoplasma gondii)
- Rna38 (14 kDa, RNA from Toxoplasma gondii)
- Ml172 (15 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ul23m (25 kDa, Protein from Toxoplasma gondii)
- Lsub (9 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul4m (54 kDa, Protein from Toxoplasma gondii)
- Rna3 (29 kDa, RNA from Toxoplasma gondii)
- Ulr1 (8 kDa, RNA from Toxoplasma gondii)
- Ulr7,ulr8 (3 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul24c (22 kDa, Protein from Toxoplasma gondii)
- Lsua (57 kDa, RNA from Toxoplasma gondii)
- Rap domain-containing protein (49 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (67 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ml54 (10 kDa, Protein from Toxoplasma gondii)
- Ml162 (30 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (58 kDa, Protein from Toxoplasma gondii)
- Rna16 (8 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein rpl22 (17 kDa, Protein from Toxoplasma gondii)
- Bl27m (20 kDa, Protein from Toxoplasma gondii)
- Rna15 (9 kDa, RNA from Toxoplasma gondii)
- Macro domain-containing protein (57 kDa, Protein from Toxoplasma gondii)
- Ml182 (14 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l13 (24 kDa, Protein from Toxoplasma gondii)
- Lsud/e (89 kDa, RNA from Toxoplasma gondii)
- Transmembrane protein (4 kDa, Protein from Toxoplasma gondii)
- Lsu ribosomal protein l2p, putative (37 kDa, Protein from Toxoplasma gondii)
- Rna7 (29 kDa, RNA from Toxoplasma gondii)
- Ml164 (26 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (83 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (49 kDa, Protein from Toxoplasma gondii)
- Ml183 (3 kDa, Protein from Toxoplasma gondii)
- Rna2 (20 kDa, RNA from Toxoplasma gondii)
- Ml176 (11 kDa, Protein from Toxoplasma gondii)
- Rna6 (18 kDa, RNA from Toxoplasma gondii)
- Lsu structure derived from the lsu sample of the mitoribosome from t. gondii. (Complex from Toxoplasma gondii)
- Large ribosomal subunit protein bl21m (47 kDa, Protein from Toxoplasma gondii)
- Rna36 (10 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein l46 (32 kDa, Protein from Toxoplasma gondii)
- Lsuf/g (62 kDa, RNA from Toxoplasma gondii)
- Ml40 (27 kDa, Protein from Toxoplasma gondii)
- Ulr4 (2 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ml49 (8 kDa, Protein from Toxoplasma gondii)
- Rna11 (22 kDa, RNA from Toxoplasma gondii)
- Ulr2 (11 kDa, RNA from Toxoplasma gondii)
Cryo-EM structure of the human 55S mitoribosome with Tigecycline
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8k2a
Q-score: 0.545
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- 55s mitoribosome with tigecycline (Complex from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 39S mitoribosome with Tigecycline
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8k2b
Q-score: 0.477
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- 4'-phosphopantetheine (358 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Mitochondrial ribosome and complex i assembly factor altmief1 (8 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- 55s mitoribosome with tigecycline (Complex from Homo sapiens)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xt0
Q-score: 0.434
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8xt1
Q-score: 0.472
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8xt2
Q-score: 0.415
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms29 (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs21m (10 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein ms37 (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9m (45 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs1m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs18m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms35 (36 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- Small ribosomal subunit protein us7m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms26 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms23 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms31 (45 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms22 (41 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us11m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms40 (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms33 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs16m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us3m (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5m (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms34 (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17m (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Small ribosomal subunit protein ms39 (78 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein bs6m (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12m (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10m (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms25 (20 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein ms27 (47 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8xt3
Q-score: 0.467
Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J
Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]
- Large ribosomal subunit protein bl32m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl35m (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml41 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml38 (44 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml40 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml48 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml50 (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml37 (48 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl27m (16 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml64 (25 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul13m (20 kDa, Protein from Homo sapiens)
- 55s ribosome with tigecycline (Complex from Homo sapiens)
- Large ribosomal subunit protein ul3m (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul23m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl36m (11 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml43 (23 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Large ribosomal subunit protein ml66 (22 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl19m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml49 (19 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml53 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl28m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml54 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl20m (17 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl17m (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul24m (24 kDa, Protein from Homo sapiens)
- Val trna (22 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul4m (34 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml44 (37 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml39 (38 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml42 (16 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul29m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul16m (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15m (33 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml46 (31 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml65 (50 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl9m (30 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml45 (35 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul10m (29 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml63 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ml62 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul14m (15 kDa, Protein from Homo sapiens)
- Tigecycline (587 Da, Ligand)
- Large ribosomal subunit protein bl21m (22 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Large ribosomal subunit protein ml55 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul11m (20 kDa, Protein from Homo sapiens)
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8oin
Q-score: 0.384
Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N
Science (2023) 380 pp. 531-536 [ Pubmed: 37141370 DOI: doi:10.1126/science.adf9890 ]
- Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
- Ms39 (78 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ul22m (24 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml43 (17 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Cp phe-trna (23 kDa, RNA from Sus scrofa)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Sus scrofa)
- Small ribosomal subunit protein ms38 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Spermidine (145 Da, Ligand)
- Mitochondrial ribosomal protein s34 (55 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
- E-site trna (894 Da, RNA from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial isoform 1 (41 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
- Phenylalanine (165 Da, Ligand)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Small ribosomal subunit protein ms29 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome with mtrf1 and p-site trna (2 MDa, Complex from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mrna (2 kDa, RNA from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
- P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Sus scrofa)
- Mitoribosomal protein bs6m, mrps6 (14 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
- Potassium ion (39 Da, Ligand)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
- Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s33 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8oiq
Q-score: 0.44
Saurer M, Leibundgut M, Nadimpalli HP, Scaiola A, Schonhut T, Lee RG, Siira SJ, Rackham O, Dreos R, Lenarcic T, Kummer E, Gatfield D, Filipovska A, Ban N
Science (2023) 380 pp. 531-536 [ Pubmed: 37141370 DOI: doi:10.1126/science.adf9890 ]
- Ul16m (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- E-site trna (894 Da, RNA from Sus scrofa)
- 39s ribosomal protein l19, mitochondrial (34 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Potassium ion (39 Da, Ligand)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (19 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ul22m (24 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l14 (34 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml43 (17 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Phenylalanine (165 Da, Ligand)
- Large ribosomal subunit protein bl33m (7 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Bl17m (19 kDa, Protein from Sus scrofa)
- 39s mammalian mitochondrial ribosome with mtrf1 and p-site trnamet (1 MDa, Complex from Sus scrofa)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l32 (23 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (17 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ml51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (22 kDa, Protein from Sus scrofa)
- Peptide chain release factor 1, mitochondrial (55 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l53 (12 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Cp phe-trna (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein bl34m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l1, mitochondrial (34 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Large ribosomal subunit protein ul30m (18 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- P-site met-trna(fmet) (22 kDa, RNA from Homo sapiens)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]
- Ml42 (16 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome with trna(p/p) and trna(e*) (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Mrna (1 kDa, RNA from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Us15m (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Sus scrofa)
- Unknown (1 kDa, Protein from Sus scrofa)
- Trna(p/p) and trna(e*) (21 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Sus scrofa)