LSU structure derived from the LSU sample of the mitoribosome from T. gondii.
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9g6k
Q-score: 0.482
Wang C, Kassem S, Rocha REO, Sun P, Nguyen TT, Kloehn J, Liu X, Brusini L, Bonavoglia A, Barua S, Boissier F, Lucia Del Cistia M, Peng H, Tang X, Xie F, Wang Z, Vadas O, Suo X, Hashem Y, Soldati-Favre D, Jia Y
Nat Commun (2024) 15 pp. 10689-10689 [ Pubmed: 39690155 DOI: doi:10.1038/s41467-024-55033-z ]
- Large ribosomal subunit protein ul23m (25 kDa, Protein from Toxoplasma gondii)
- Ulr5 (4 kDa, RNA from Toxoplasma gondii)
- Lsub (9 kDa, RNA from Toxoplasma gondii)
- Ap2 domain transcription factor ap2viib-2 (21 kDa, Protein from Toxoplasma gondii)
- Bl27m (20 kDa, Protein from Toxoplasma gondii)
- Rna10 (28 kDa, RNA from Toxoplasma gondii)
- Fas1 domain-containing protein (37 kDa, Protein from Toxoplasma gondii)
- Ml174 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein l15, putative (36 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (51 kDa, Protein from Toxoplasma gondii)
- Rna35 (8 kDa, RNA from Toxoplasma gondii)
- Ml40 (27 kDa, Protein from Toxoplasma gondii)
- Rna15 (9 kDa, RNA from Toxoplasma gondii)
- Ulr2 (11 kDa, RNA from Toxoplasma gondii)
- Putative ribosomal protein l28 (33 kDa, Protein from Toxoplasma gondii)
- Rna14 (16 kDa, RNA from Toxoplasma gondii)
- Ml175 (8 kDa, Protein from Toxoplasma gondii)
- Rna31 (11 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul4m (54 kDa, Protein from Toxoplasma gondii)
- Ribosomal l22p/l17e protein (41 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein rpl22 (17 kDa, Protein from Toxoplasma gondii)
- Rna23t (14 kDa, RNA from Toxoplasma gondii)
- Ml173 (11 kDa, Protein from Toxoplasma gondii)
- Ml164 (26 kDa, Protein from Toxoplasma gondii)
- Ul1m (6 kDa, Protein from Toxoplasma gondii)
- Rna1 (30 kDa, RNA from Toxoplasma gondii)
- Rna16 (8 kDa, RNA from Toxoplasma gondii)
- Rna36 (10 kDa, RNA from Toxoplasma gondii)
- Hect-domain (ubiquitin-transferase) domain-containing protein (25 kDa, Protein from Toxoplasma gondii)
- Ulr1 (8 kDa, RNA from Toxoplasma gondii)
- Lsud/e (89 kDa, RNA from Toxoplasma gondii)
- Bl19m (43 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l13 (24 kDa, Protein from Toxoplasma gondii)
- Lsua (57 kDa, RNA from Toxoplasma gondii)
- Amp-dependent synthetase/ligase domain-containing protein (92 kDa, Protein from Toxoplasma gondii)
- Ulr9 (17 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ml43 (22 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ul29m (25 kDa, Protein from Toxoplasma gondii)
- Ml172 (15 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l3 (34 kDa, Protein from Toxoplasma gondii)
- Ml185 (6 kDa, Protein from Toxoplasma gondii)
- Rna2 (20 kDa, RNA from Toxoplasma gondii)
- Ul14m (12 kDa, Protein from Toxoplasma gondii)
- Lsuc (8 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein l46 (32 kDa, Protein from Toxoplasma gondii)
- Bir protein (26 kDa, Protein from Toxoplasma gondii)
- Lsu structure derived from the lsu sample of the mitoribosome from t. gondii. (Complex from Toxoplasma gondii)
- Macro domain-containing protein (57 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (58 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (49 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (43 kDa, Protein from Toxoplasma gondii)
- Ml178 (10 kDa, Protein from Toxoplasma gondii)
- Rna3 (29 kDa, RNA from Toxoplasma gondii)
- Peptidyl-prolyl cis-trans isomerase (26 kDa, Protein from Toxoplasma gondii)
- Lsuf/g (62 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul11m (19 kDa, Protein from Toxoplasma gondii)
- Putative 60s ribosomal protein l27 (8 kDa, Protein from Toxoplasma gondii)
- Ml53 (13 kDa, Protein from Toxoplasma gondii)
- Ml184 (4 kDa, Protein from Toxoplasma gondii)
- Ap2 domain transcription factor ap2iv-1 (19 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ml49 (8 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ul24c (25 kDa, Protein from Toxoplasma gondii)
- Ssuf (12 kDa, RNA from Toxoplasma gondii)
- Ulr3 (8 kDa, RNA from Toxoplasma gondii)
- Ulr4 (2 kDa, RNA from Toxoplasma gondii)
- Putative 50s ribosomal protein l17 (29 kDa, Protein from Toxoplasma gondii)
- Putative ribosomal protein l20 (14 kDa, Protein from Toxoplasma gondii)
- Rrm domain-containing protein (47 kDa, Protein from Toxoplasma gondii)
- Ml176 (11 kDa, Protein from Toxoplasma gondii)
- Ml183 (3 kDa, Protein from Toxoplasma gondii)
- Ml162 (30 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein bl21m (47 kDa, Protein from Toxoplasma gondii)
- Ml182 (14 kDa, Protein from Toxoplasma gondii)
- Rna11 (22 kDa, RNA from Toxoplasma gondii)
- Transmembrane protein (4 kDa, Protein from Toxoplasma gondii)
- Rna38 (14 kDa, RNA from Toxoplasma gondii)
- Ulr7,ulr8 (3 kDa, RNA from Toxoplasma gondii)
- Transmembrane protein (31 kDa, Protein from Toxoplasma gondii)
- Lsu ribosomal protein l2p, putative (37 kDa, Protein from Toxoplasma gondii)
- Rna13 (15 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein l9, n-terminal domain-containing protein (9 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l33 (14 kDa, Protein from Toxoplasma gondii)
- Rna32 (5 kDa, RNA from Toxoplasma gondii)
- Rap domain-containing protein (85 kDa, Protein from Toxoplasma gondii)
- Rna37 (19 kDa, RNA from Toxoplasma gondii)
- Bl35m (13 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (49 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ul24c (22 kDa, Protein from Toxoplasma gondii)
- Rna6 (18 kDa, RNA from Toxoplasma gondii)
- Rna7 (29 kDa, RNA from Toxoplasma gondii)
- Rap domain-containing protein (67 kDa, Protein from Toxoplasma gondii)
- Duf6832 domain-containing protein (55 kDa, Protein from Toxoplasma gondii)
- Rna29 (16 kDa, RNA from Toxoplasma gondii)
- Ml181 (5 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (83 kDa, Protein from Toxoplasma gondii)
- Ml180 (13 kDa, Protein from Toxoplasma gondii)
- Bl36m (10 kDa, Protein from Toxoplasma gondii)
- Bl32m (9 kDa, Protein from Toxoplasma gondii)
- Ml177 (13 kDa, Protein from Toxoplasma gondii)
- Ribosomal l25 family protein (37 kDa, Protein from Toxoplasma gondii)
- Ml179 (12 kDa, Protein from Toxoplasma gondii)
- Ulr6 (4 kDa, RNA from Toxoplasma gondii)
- Putative 50s ribosomal protein l16 (20 kDa, Protein from Toxoplasma gondii)
- Ml148 (96 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ml54 (10 kDa, Protein from Toxoplasma gondii)
The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6ywe
Q-score: 0.575
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ DOI: doi:10.1038/s41467-020-18830-w Pubmed: 33056988 ]
- Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
- Bs1m (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
- Ms27 (44 kDa, Protein from Neurospora crassa)
- Bs16m (12 kDa, Protein from Neurospora crassa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
- Ul17m (22 kDa, Protein from Neurospora crassa)
- Potassium ion (39 Da, Ligand)
- Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
- Ul13m (20 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
- 23s rrna (1 MDa, RNA from Neurospora crassa)
- Ml41 (11 kDa, Protein from Neurospora crassa)
- Ms46 (43 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
- Trna p/e state (23 kDa, RNA from Neurospora crassa)
- Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
- Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
- Ml40 (41 kDa, Protein from Neurospora crassa)
- Bs21m (25 kDa, Protein from Neurospora crassa)
- Zinc ion (65 Da, Ligand)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Ml54 (23 kDa, Protein from Neurospora crassa)
- Spermine (202 Da, Ligand)
- 16s rrna (600 kDa, RNA from Neurospora crassa)
- Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
- Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
- Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mrp-l46 domain-containing protein (41 kDa, Protein from Neurospora crassa)
- Ms33 (12 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
- Pebp-like protein (50 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
- Ml67 (32 kDa, Protein from Neurospora crassa)
- Us9m (35 kDa, Protein from Neurospora crassa)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
- Ml50 (49 kDa, Protein from Neurospora crassa)
- 30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
- Ms26 (35 kDa, Protein from Neurospora crassa)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
- Translational machinery component (42 kDa, Protein from Neurospora crassa)
- Bl19m (28 kDa, Protein from Neurospora crassa)
- Ml49 (18 kDa, Protein from Neurospora crassa)
- Ms45 (39 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml32 (mitochondrial),mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
- Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
- Bl33m (7 kDa, Protein from Neurospora crassa)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
- Ul11m (16 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
- Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
- Mrna (3 kDa, RNA from Neurospora crassa)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Us8m (17 kDa, Protein from Neurospora crassa)
- Bl28m (31 kDa, Protein from Neurospora crassa)
- Ul23m (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
- Mitoribosome of neurospora crassa in the p/e state (Complex from Neurospora crassa)
- Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
- Us17m (18 kDa, Protein from Neurospora crassa)
- If1 (10 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
- Ul6m (28 kDa, Protein from Neurospora crassa)
The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ywx
Q-score: 0.546
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ DOI: doi:10.1038/s41467-020-18830-w Pubmed: 33056988 ]
- Ml49 (18 kDa, Protein from Neurospora crassa OR74A)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 40s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s21 (25 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l3 (41 kDa, Protein from Neurospora crassa OR74A)
- Bs1m (51 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l30 (18 kDa, Protein from Neurospora crassa OR74A)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Igr domain-containing protein (26 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l1 (33 kDa, Protein from Neurospora crassa OR74A)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa OR74A)
- Potassium ion (39 Da, Ligand)
- Mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s18 (28 kDa, Protein from Neurospora crassa OR74A)
- 23s rrna (1 MDa, RNA from Neurospora crassa OR74A)
- Mito ribosomal protein s4 (51 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s16, mitochondrial (12 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l6 (28 kDa, Protein from Neurospora crassa OR74A)
- If1 (10 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l20 (25 kDa, Protein from Neurospora crassa OR74A)
- Mitoribosome of neurospora crassa with trna in the e-site (Complex from Neurospora crassa OR74A)
- 16s rrna (600 kDa, RNA from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein s19 (10 kDa, Protein from Neurospora crassa OR74A)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s15 (35 kDa, Protein from Neurospora crassa OR74A)
- Zinc ion (65 Da, Ligand)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa OR74A)
- Spermine (202 Da, Ligand)
- 50s ribosomal subunit l30 (41 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s5 (53 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s6 (13 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein l13 (20 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s5, mitochondrial (58 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s13 (13 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l5 (39 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 60s ribosomal protein l25 (18 kDa, Protein from Neurospora crassa OR74A)
- Aconitate hydratase (23 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l17 (22 kDa, Protein from Neurospora crassa OR74A)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 50s ribosomal subunit protein l15 (33 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa OR74A)
- Ms46 (43 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l2 (42 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l14 (14 kDa, Protein from Neurospora crassa OR74A)
- Bl33m (7 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 30s ribosomal protein s12 (18 kDa, Protein from Neurospora crassa OR74A)
- Bl31m (23 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s8 (17 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa OR74A)
- Ms33 (12 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein l44 (11 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein l43 (15 kDa, Protein from Neurospora crassa OR74A)
- Ml40 (41 kDa, Protein from Neurospora crassa OR74A)
- Ml54 (23 kDa, Protein from Neurospora crassa OR74A)
- Ms27 (44 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa OR74A)
- Ul10m (37 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit s18 (42 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l19 (16 kDa, Protein from Neurospora crassa OR74A)
- Bl27m (49 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit yml35 (50 kDa, Protein from Neurospora crassa OR74A)
- Ml50 (49 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein (28 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l3 (48 kDa, Protein from Neurospora crassa OR74A)
- Trna e-site (19 kDa, RNA from Neurospora crassa OR74A)
- Ml67 (32 kDa, Protein from Neurospora crassa OR74A)
- Ml41 (11 kDa, Protein from Neurospora crassa OR74A)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa OR74A)
- Ms45 (39 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l16 (27 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit l23 (26 kDa, Protein from Neurospora crassa OR74A)
- Ms26 (35 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 37s ribosomal protein s17 (18 kDa, Protein from Neurospora crassa OR74A)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa OR74A)
- Magnesium ion (24 Da, Ligand)
- Fe superoxide dismutase (34 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s9, mitochondrial (35 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l24 (31 kDa, Protein from Neurospora crassa OR74A)
The structure of the mitoribosome from Neurospora crassa with bound tRNA at the P-site
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6ywy
Q-score: 0.56
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ DOI: doi:10.1038/s41467-020-18830-w Pubmed: 33056988 ]
- Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
- Bs1m (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
- Ms27 (44 kDa, Protein from Neurospora crassa)
- Bs16m (12 kDa, Protein from Neurospora crassa)
- P-site-trna (23 kDa, RNA from Neurospora crassa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
- Ul17m (22 kDa, Protein from Neurospora crassa)
- Potassium ion (39 Da, Ligand)
- Poly-peptide (515 Da, Protein from Neurospora crassa)
- Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
- Ul13m (20 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
- 23s rrna (1 MDa, RNA from Neurospora crassa)
- Ml41 (11 kDa, Protein from Neurospora crassa)
- Ms46 (43 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
- Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
- Ml40 (41 kDa, Protein from Neurospora crassa)
- Bs21m (25 kDa, Protein from Neurospora crassa)
- Zinc ion (65 Da, Ligand)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Ml54 (23 kDa, Protein from Neurospora crassa)
- Spermine (202 Da, Ligand)
- 16s rrna (600 kDa, RNA from Neurospora crassa)
- Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
- Ml46 (41 kDa, Protein from Neurospora crassa)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
- Mrna (3 kDa, RNA from Neurospora crassa)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
- Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
- Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ms33 (12 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
- Pebp-like protein (50 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
- Ml67 (32 kDa, Protein from Neurospora crassa)
- Us9m (35 kDa, Protein from Neurospora crassa)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
- Ml50 (49 kDa, Protein from Neurospora crassa)
- 30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
- Ms26 (35 kDa, Protein from Neurospora crassa)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
- Translational machinery component (42 kDa, Protein from Neurospora crassa)
- Bl19m (28 kDa, Protein from Neurospora crassa)
- Ml49 (18 kDa, Protein from Neurospora crassa)
- Ms45 (39 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
- Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
- Bl33m (7 kDa, Protein from Neurospora crassa)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
- Ul11m (16 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml32 (mitochondrial) (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
- Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
- Mitoribosome of neurospora crassa in the trna bound state (p-site). (Complex from Neurospora crassa)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Us8m (17 kDa, Protein from Neurospora crassa)
- Bl28m (31 kDa, Protein from Neurospora crassa)
- Ul23m (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
- Us17m (18 kDa, Protein from Neurospora crassa)
- If1 (10 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
- Ul6m (28 kDa, Protein from Neurospora crassa)
The mitochondrial ribosome from Tetrahymena thermophila
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6z1p
Q-score: 0.383
eLife (2020) 9 [ DOI: doi:10.7554/eLife.59264 Pubmed: 32553108 ]
- Ms81 (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms91 (24 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms23 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms93 (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l13 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/l12m (9 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l17 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms82 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl25m (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml46 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l33 (7 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml54 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- The mitochondrial ribosome from tetrahymena thermophila (4 MDa, Complex from Tetrahymena thermophila SB210)
- Ssu rrna_1 (62 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l2 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms77 (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l9, amine-terminal domain protein (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s15 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s12 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l51/s25/ci-b8 domain protein (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l27 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms33 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s18 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml102 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Lsu rrna_2 (743 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Lsu rrna_1 (89 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ymf73 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l15, putative (34 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l16 (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l23, putative (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl32m (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l27 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s14 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms79 (30 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Selr domain protein (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms45 (54 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s3 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml64 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms78 (179 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Signal peptide-binding domain protein (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml53 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l24 (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf76 (50 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Enoyl-coa hydratase/isomerase (171 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms87 (127 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal subunit protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 39-s ribosomal protein l47 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l3 (49 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Igr motif protein (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l22/l17e (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms38 (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms88 (25 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl35m (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms85 (120 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf59 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf61 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf69 (8 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms26 (69 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms34 (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Large subunit ribosomal protein (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms37 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l21 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml40 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l20 (20 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms90 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml103 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s13 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s16 (52 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml106 (57 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf74 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Iron donor protein cyay (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s9 (87 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l7/l12 carboxy-terminal domain protein (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms31 (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms84,ms84 (10 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf64 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s5 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Parp alpha-helical domain-containing protein,ms83 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bs21m (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s6 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l28 (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms89 (51 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ssu rrna_2 (448 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s19 (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l14 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s17 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf63 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Iron-binding zinc finger cdgsh type protein (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms75 (1 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf60 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms76 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal death-associated protein (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Magnesium ion (24 Da, Ligand)
- Ml101 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l11, amine-terminal domain protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl19m (28 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml104 (90 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l4 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))