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sample_name:"mL54" AND xref_links:"alphafold" AND xref_links:"scop2" AND author_name:"A"
The Large subunit of the Kinetoplastid mitochondrial ribosome
Release date: April 28, 2021
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7aih
Q-score: 0.479
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7aih
Q-score: 0.479
Soufari H, Waltz F, Parrot C, Durrieu-Gaillard S, Bochler A, Kuhn L, Sissler M, Hashem Y
PNAS (2020) 117 pp. 29851-29861 [ DOI: doi:10.1073/pnas.2011301117 Pubmed: 33168716 ]
Sample:
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Leishmania major)
- Ml95 (18 kDa, Protein from Leishmania major)
- Bl28m (27 kDa, Protein from Leishmania major)
- Putative 50s ribosomal protein l17 (35 kDa, Protein from Leishmania major)
- Ul22m (32 kDa, Protein from Leishmania major)
- Ml73 (36 kDa, Protein from Leishmania major)
- Ml88 (22 kDa, Protein from Leishmania major)
- Ml100 (146 kDa, Protein from Leishmania major)
- Ribosomal rna (2 MDa, RNA from Leishmania major)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Bl33m (13 kDa, Protein from Leishmania major)
- Ml94 (17 kDa, Protein from Leishmania major)
- Ml52,ml52 (29 kDa, Protein from Leishmania major)
- Bl36m (21 kDa, Protein from Leishmania major)
- Bl27m (21 kDa, Protein from Leishmania major)
- Ml76 (38 kDa, Protein from Leishmania major)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Leishmania major)
- Ml68 (65 kDa, Protein from Leishmania major)
- Ml98 (13 kDa, Protein from Leishmania major)
- Putative ribosomal protein l14 (21 kDa, Protein from Leishmania major)
- Ul4m (50 kDa, Protein from Leishmania major)
- Bl21m (21 kDa, Protein from Leishmania major)
- Ml75 (39 kDa, Protein from Leishmania major)
- 50s ribosomal protein l13-like protein (20 kDa, Protein from Leishmania major)
- Ml69 (54 kDa, Protein from Leishmania major)
- Ml54/69 (28 kDa, Protein from Leishmania major)
- Leishmania mitochondrial ribosome (Complex from Leishmania tarentolae)
- Putative ribosomal protein l11 (40 kDa, Protein from Leishmania major)
- Ml89 (21 kDa, Protein from Leishmania major)
- Ml74 (39 kDa, Protein from Leishmania major)
- Ml42 (22 kDa, Protein from Leishmania major)
- Ml72 (56 kDa, Protein from Leishmania major)
- Mrp-l46 domain-containing protein (33 kDa, Protein from Leishmania major)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Leishmania major)
- Ub (5 kDa, Protein from Leishmania major)
- Ml79 (33 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Leishmania major)
- Ml63 (18 kDa, Protein from Leishmania major)
- Bl35m (18 kDa, Protein from Leishmania major)
- Ribosomal_l16 domain-containing protein (19 kDa, Protein from Leishmania major)
- Bl20 (22 kDa, Protein from Leishmania major)
- Uc (12 kDa, Protein from Leishmania major)
- Bl32m (9 kDa, Protein from Leishmania major)
- Ml97 (12 kDa, Protein from Leishmania major)
- Ml93 (18 kDa, Protein from Leishmania major)
- Ud (8 kDa, Protein from Leishmania major)
- Zinc ion (65 Da, Ligand)
- Bl19m (16 kDa, Protein from Leishmania major)
- Ul23m (28 kDa, Protein from Leishmania major)
- Ml70 (50 kDa, Protein from Leishmania major)
- Ribosomal protein l3-like protein (54 kDa, Protein from Leishmania major)
- Ua (17 kDa, Protein from Leishmania major)
- Ml86 (21 kDa, Protein from Leishmania major)
- Ml80 (27 kDa, Protein from Leishmania major)
- Ml82 (37 kDa, Protein from Leishmania major)
- Ml38 (58 kDa, Protein from Leishmania major)
- Bl31m (21 kDa, Protein from Leishmania major)
- Ml96 (16 kDa, Protein from Leishmania major)
- Ul30m (45 kDa, Protein from Leishmania major)
- Ul29m (54 kDa, Protein from Leishmania major)
- Ml87 (22 kDa, Protein from Leishmania major)
- Ml40 (33 kDa, Protein from Leishmania major)
- Ul24m (53 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (28 kDa, Protein from Leishmania major)
- Ml85 (27 kDa, Protein from Leishmania major)
- Ml99 (13 kDa, Protein from Leishmania major)
- Ml53 (35 kDa, Protein from Leishmania major)
- Ul10m (22 kDa, Protein from Leishmania major)
- Lim zinc-binding domain-containing protein (25 kDa, Protein from Leishmania major)
- Putative ribosomal protein l2 (43 kDa, Protein from Leishmania major)
- Ml49 (26 kDa, Protein from Leishmania major)
- C2h2-type domain-containing protein (20 kDa, Protein from Leishmania major)
- Ml41 (22 kDa, Protein from Leishmania major)
- Ml84 (24 kDa, Protein from Leishmania major)
The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site
Release date: Nov. 11, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ywx
Q-score: 0.546
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ywx
Q-score: 0.546
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]
Sample:
- Bl31m (23 kDa, Protein from Neurospora crassa OR74A)
- Spermine (202 Da, Ligand)
- Mito ribosomal protein s21 (25 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa OR74A)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa OR74A)
- Ml67 (32 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal subunit l30 (41 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l30 (18 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s8 (17 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 30s ribosomal protein s12 (18 kDa, Protein from Neurospora crassa OR74A)
- Aconitate hydratase (23 kDa, Protein from Neurospora crassa OR74A)
- Ms46 (43 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 60s ribosomal protein l25 (18 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s18 (28 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s13 (13 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l20 (25 kDa, Protein from Neurospora crassa OR74A)
- Ml50 (49 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l2 (42 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s6 (13 kDa, Protein from Neurospora crassa OR74A)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa OR74A)
- Bl33m (7 kDa, Protein from Neurospora crassa OR74A)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa OR74A)
- Mitoribosome of neurospora crassa with trna in the e-site (Complex from Neurospora crassa OR74A)
- Mitochondrial 40s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s9, mitochondrial (35 kDa, Protein from Neurospora crassa OR74A)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l5 (39 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal subunit protein l15 (33 kDa, Protein from Neurospora crassa OR74A)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l3 (48 kDa, Protein from Neurospora crassa OR74A)
- Ms27 (44 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein l43 (15 kDa, Protein from Neurospora crassa OR74A)
- Igr domain-containing protein (26 kDa, Protein from Neurospora crassa OR74A)
- 16s rrna (600 kDa, RNA from Neurospora crassa OR74A)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l19 (16 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit l23 (26 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein s19 (10 kDa, Protein from Neurospora crassa OR74A)
- Bs1m (51 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l24 (31 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l1 (33 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein (28 kDa, Protein from Neurospora crassa OR74A)
- If1 (10 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l17 (22 kDa, Protein from Neurospora crassa OR74A)
- Ml49 (18 kDa, Protein from Neurospora crassa OR74A)
- Trna e-site (19 kDa, RNA from Neurospora crassa OR74A)
- Bl27m (49 kDa, Protein from Neurospora crassa OR74A)
- Ms33 (12 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa OR74A)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l14 (14 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein l44 (11 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit s18 (42 kDa, Protein from Neurospora crassa OR74A)
- Ms26 (35 kDa, Protein from Neurospora crassa OR74A)
- Ml41 (11 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa OR74A)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 60s ribosomal protein l6 (28 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s4 (51 kDa, Protein from Neurospora crassa OR74A)
- Ul10m (37 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 37s ribosomal protein s17 (18 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s15 (35 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s16, mitochondrial (12 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa OR74A)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa OR74A)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l16 (27 kDa, Protein from Neurospora crassa OR74A)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit yml35 (50 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l3 (41 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s5 (53 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s5, mitochondrial (58 kDa, Protein from Neurospora crassa OR74A)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa OR74A)
- Ms45 (39 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein l13 (20 kDa, Protein from Neurospora crassa OR74A)
- Ml54 (23 kDa, Protein from Neurospora crassa OR74A)
- 23s rrna (1 MDa, RNA from Neurospora crassa OR74A)
- Ml40 (41 kDa, Protein from Neurospora crassa OR74A)
- Fe superoxide dismutase (34 kDa, Protein from Neurospora crassa OR74A)
The mitochondrial ribosome from Tetrahymena thermophila
Release date: June 24, 2020
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6z1p
Q-score: 0.383
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6z1p
Q-score: 0.383
eLife (2020) 9 [ Pubmed: 32553108 DOI: doi:10.7554/eLife.59264 ]
Sample:
- Ribosomal protein s12 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l27 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf59 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms82 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l33 (7 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Igr motif protein (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l7/l12 carboxy-terminal domain protein (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms79 (30 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms90 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Large subunit ribosomal protein (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms81 (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l15, putative (34 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf64 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l14 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal death-associated protein (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l17 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml104 (90 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms45 (54 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal subunit protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Enoyl-coa hydratase/isomerase (171 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l27 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms78 (179 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s17 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Magnesium ion (24 Da, Ligand)
- Ml101 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml54 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms76 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml53 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms37 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- The mitochondrial ribosome from tetrahymena thermophila (4 MDa, Complex from Tetrahymena thermophila SB210)
- Ymf73 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Zinc ion (65 Da, Ligand)
- Ml103 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms87 (127 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl32m (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Lsu rrna_2 (743 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l28 (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml40 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms91 (24 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l4 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms93 (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/l12m (9 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l21 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l22/l17e (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Lsu rrna_1 (89 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ms33 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ssu rrna_1 (62 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ymf60 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Signal peptide-binding domain protein (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl25m (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms85 (120 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s16 (52 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml64 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s9 (87 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s6 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf63 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf69 (8 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms38 (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l11, amine-terminal domain protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l9, amine-terminal domain protein (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl19m (28 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Selr domain protein (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms84,ms84 (10 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l13 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml106 (57 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf74 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s18 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Iron donor protein cyay (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Iron-binding zinc finger cdgsh type protein (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms89 (51 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms23 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l23, putative (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ms88 (25 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl35m (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms77 (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf61 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms75 (1 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l16 (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l51/s25/ci-b8 domain protein (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml102 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms34 (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Parp alpha-helical domain-containing protein,ms83 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l3 (49 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf76 (50 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l20 (20 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml46 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms31 (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s14 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bs21m (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s3 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l24 (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s13 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s19 (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l2 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms26 (69 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s15 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ssu rrna_2 (448 kDa, RNA from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s5 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 39-s ribosomal protein l47 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
Release date: Aug. 22, 2018
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]
Sample:
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Sus scrofa)
- Trna-phe, mitochondrial (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Bs16m (15 kDa, Protein from Sus scrofa)
- Ml65 (49 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex from sus sucorfa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Ms31 (44 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Ms27 (51 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l40, mitochondrial isoform 1 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Sodium ion (22 Da, Ligand)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Sus scrofa)
- 12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- Ml43 (17 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- 16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Uncharacterized protein (27 kDa, Protein from Sus scrofa)
- Death associated protein 3 (45 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ml45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Ml50 (18 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Ict1 (38 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Sus scrofa)