Capsid of DT57C bacteriophage in the full state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ho3
Q-score: 0.524
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
Capsid of DT57C bacteriophage in the empty state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hqk
Q-score: 0.507
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
Bacteriophage SU10 virion (C1)
Resolution: 7.4 Å
EM Method: Single-particle
Fitted PDBs: 7z4b
Q-score: 0.194
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Adaptor (28 kDa, Protein from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Surface protein (110 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (32 MDa, Virus from Escherichia phage vB EcoP SU10)
- Putative tail tip fiber protein (35 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative structural protein (29 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative tail fiber (83 kDa, Protein from Escherichia phage vB EcoP SU10)
- Portal protein (85 kDa, Protein from Escherichia phage vB EcoP SU10)
The capsid of bacteriophage SU10.
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7z49
Q-score: -0.007
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (27 MDa, Virus from Escherichia phage vB EcoP SU10)
Central part (C10) of bacteriophage SU10 capsid
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7z45
Q-score: 0.457
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (9 MDa, Virus from Escherichia phage vB EcoP SU10)
Top part (C5) of bacteriophage SU10 capsid
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7z46
Q-score: 0.383
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Escherichia phage vb_ecop_su10 (5 MDa, Virus from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
Bacteriophage SU10 tail and bottom part of the capsid (C1)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7z4a
Q-score: 0.197
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Surface protein (110 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (4 MDa, Virus from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative tail fiber (83 kDa, Protein from Escherichia phage vB EcoP SU10)
- Adaptor protein (28 kDa, Protein from Escherichia phage vB EcoP SU10)
- Portal protein (85 kDa, Protein from Escherichia phage vB EcoP SU10)
Bottom part (C5) of bacteriophage SU10 capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7z48
Q-score: 0.352
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (655 MDa, Virus from Escherichia phage vB EcoP SU10)
Thermophage P23-45 procapsid asymmetric reconstruction
Bayfield OW, Klimuk E, Winkler DC, Hesketh EL, Chechik M, Cheng N, Dykeman EC, Minakhin L, Ranson NA, Severinov K, Steven AC, Antson AA
PNAS (2019) 116 pp. 3556-3561 [ Pubmed: 30737287 DOI: doi:10.1073/pnas.1813204116 ]
Thermophage P23-45 empty expanded capsid C5 reconstruction
Bayfield OW, Klimuk E, Winkler DC, Hesketh EL, Chechik M, Cheng N, Dykeman EC, Minakhin L, Ranson NA, Severinov K, Steven AC, Antson AA
PNAS (2019) 116 pp. 3556-3561 [ Pubmed: 30737287 DOI: doi:10.1073/pnas.1813204116 ]
- Major head protein (Protein from Thermus phage P2345)
- Thermus phage p2345 (26 MDa, Virus from Thermus phage P2345)
- Portal protein (Protein from Thermus phage P2345)
- Auxiliary protein (Protein from Thermus phage P2345)