Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g1r
Q-score: 0.331
Boyd CM, Subramanian S, Dunham DT, Parent KN, Seed KD
bioRxiv (2023) [ DOI: doi:10.1101/2023.03.01.530633 Pubmed: 36909475 ]
- Major head protein (38 kDa, Protein from Vibrio phage ICP1 2011 A)
- Ple procapsid (Complex from Vibrio cholerae)
- Serine protease (33 kDa, Protein from Vibrio cholerae)
SaPI1 mature capsid structure containing DNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8vd4
Q-score: 0.566
Mukherjee A, Kizziah JL, Hawkins NC, Nasef MO, Parker LK, Dokland T
J Mol Biol (2023) 436 pp. 168415-168415 [ Pubmed: 38135177 DOI: doi:10.1016/j.jmb.2023.168415 ]
- Dubowvirus dv80alpha (Virus from Dubowvirus dv80alpha)
- Major head protein (36 kDa, Protein from Dubowvirus dv80alpha)
Capsid of DT57C bacteriophage in the full state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ho3
Q-score: 0.524
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
Capsid of DT57C bacteriophage in the empty state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hqk
Q-score: 0.507
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
Icosahedral reconstruction of the thermophilic bacteriophage P74-26 capsid
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6o3h
Q-score: 0.454
Stone NP, Demo G, Agnello E, Kelch BA
Nat Commun (2019) 10 pp. 4471-4471 [ Pubmed: 31578335 DOI: doi:10.1038/s41467-019-12341-z ]
- Thermus phage p7426 (Virus from Thermus phage P7426)
- Major head protein (46 kDa, Protein from Thermus virus P74-26)
- P74-26 head decoration protein (16 kDa, Protein from Thermus virus P74-26)
Thermophage P23-45 procapsid icosahedral reconstruction
Resolution: 4.39 Å
EM Method: Single-particle
Fitted PDBs: 6ibc
Q-score: 0.282
Bayfield OW, Klimuk E, Winkler DC, Hesketh EL, Chechik M, Cheng N, Dykeman EC, Minakhin L, Ranson NA, Severinov K, Steven AC, Antson AA
PNAS (2019) 116 pp. 3556-3561 [ Pubmed: 30737287 DOI: doi:10.1073/pnas.1813204116 ]
- Major head protein (46 kDa, Protein from Thermus virus P23-45)
- Thermus phage p2345 (19 MDa, Virus from Thermus phage P2345)
Thermophage P23-45 empty expanded capsid icosahedral reconstruction
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 6i9e
Q-score: 0.472
Bayfield OW, Klimuk E, Winkler DC, Hesketh EL, Chechik M, Cheng N, Dykeman EC, Minakhin L, Ranson NA, Severinov K, Steven AC, Antson AA
PNAS (2019) 116 pp. 3556-3561 [ Pubmed: 30737287 DOI: doi:10.1073/pnas.1813204116 ]
- Major head protein (46 kDa, Protein from Thermus virus P23-45)
- Auxiliary protein (16 kDa, Protein from Thermus virus P23-45)
- Thermus phage p2345 (26 MDa, Virus from Thermus phage P2345)
Staphylococcus aureus phage 80alpha mature capsid
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6c21
Q-score: 0.261
Kizziah JL, Manning KA, Dearborn AD, Wall EA, Klenow L, Hill RLL, Spilman MS, Stagg SM, Christie GE, Dokland T
Viruses (2017) 9 [ Pubmed: 29258203 DOI: doi:10.3390/v9120384 ]
- Staphylococcus phage 80alpha (15 MDa, Virus from Staphylococcus phage 80alpha)
- Major head protein (36 kDa, Protein from Staphylococcus virus 80alpha)
Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid
Resolution: 8.4 Å
EM Method: Single-particle
Fitted PDBs: 6c22
Q-score: 0.199
Kizziah JL, Manning KA, Dearborn AD, Wall EA, Klenow L, Hill RLL, Spilman MS, Stagg SM, Christie GE, Dokland T
Viruses (2017) 9 [ Pubmed: 29258203 DOI: doi:10.3390/v9120384 ]
- Major head protein (36 kDa, Protein from Staphylococcus virus 80alpha)
- Staphylococcus phage 80alpha (8 MDa, Virus from Staphylococcus phage 80alpha)
Staphylococcus aureus phage 80alpha procapsid
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6b0x
Q-score: 0.299
Dearborn AD, Wall EA, Kizziah JL, Klenow L, Parker LK, Manning KA, Spilman MS, Spear JM, Christie GE, Dokland T
eLife (2017) 6 [ Pubmed: 28984245 DOI: doi:10.7554/eLife.30822 ]
- Staphylococcus phage 80alpha (25 MDa, Virus from Staphylococcus phage 80alpha)
- Scaffold protein (23 kDa, Protein from Staphylococcus phage 80alpha)
- Major head protein (36 kDa, Protein from Staphylococcus phage 80alpha)