Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map IV)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map III)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map II)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map V)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VI)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VII)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VIII)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (Consensus refinement)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Transcription-coupled nucleotide excision repair complex (Complex)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Human NEXT dimer in complex with the nuclear RNA exosome
Gerlach P, Garland W, Lingaraju M, Salerno-Kochan A, Bonneau F, Basquin J, Jensen TH, Conti E
Mol Cell (2022) 82 pp. 2505-2518.e7 [ Pubmed: 35688157 DOI: doi:10.1016/j.molcel.2022.04.011 ]
- Exosome complex component rrp45 (Protein from Homo sapiens)
- Rna 5 prime hairpin u60 (Complex from synthetic construct)
- Human next dimer in complex with the nuclear rna exosome (Complex)
- Human next dimer in complex with the nuclear rna exosome (Complex from Homo sapiens)
- Exosome complex component rrp4 (Protein from Homo sapiens)
- Rna-binding protein 7 (Protein from Homo sapiens)
- M-phase phosphoprotein 6 (Protein from Homo sapiens)
- Rna 5 prime hairpin u60 (RNA from synthetic construct)
- Nuclear nucleic acid-binding protein c1d (Protein from Homo sapiens)
- Exosome complex exonuclease rrp44 (Protein from Homo sapiens)
- Exosome complex component rrp46 (Protein from Homo sapiens)
- Exosome rna helicase mtr4 (Protein from Homo sapiens)
- Exosome complex component rrp41 (Protein from Homo sapiens)
- Exosome complex component rrp40 (Protein from Homo sapiens)
- Zinc finger cchc domain-containing protein 8 (Protein from Homo sapiens)
- Exosome complex component mtr3 (Protein from Homo sapiens)
- Exosome component 10 (Protein from Homo sapiens)
- Exosome complex component csl4 (Protein from Homo sapiens)
- Exosome complex component rrp42 (Protein from Homo sapiens)
Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 6skg
Q-score: 0.614
Sas-Chen A, Thomas JM, Matzov D, Taoka M, Nance KD, Nir R, Bryson KM, Shachar R, Liman GLS, Burkhart BW, Gamage ST, Nobe Y, Briney CA, Levy MJ, Fuchs RT, Robb GB, Hartmann J, Sharma S, Lin Q, Florens L, Washburn MP, Isobe T, Santangelo TJ, Shalev-Benami M, Meier JL, Schwartz S
Nature (2020) 583 pp. 638-643 [ Pubmed: 32555463 DOI: doi:10.1038/s41586-020-2418-2 ]
- 30s ribosomal protein s19e (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l37e (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l40e (5 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s8 (14 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s4e (27 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s7 (24 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l4 (28 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l21e (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l39e (6 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l18e (13 kDa, Protein from Thermococcus kodakarensis)
- 16s ribosomal rna (487 kDa, RNA from Thermococcus kodakarensis)
- 30s ribosomal protein s19 (15 kDa, Protein from Thermococcus kodakarensis)
- Predicted zinc-ribbon rna-binding protein involved in translation (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l2 (26 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l19e (17 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s28e (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l24e (8 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l29 (7 kDa, Protein from Thermococcus kodakarensis)
- Ribosomal protein el35a (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l24 (14 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l3 (39 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s13 (17 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s3 (23 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l32e (14 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s9 (15 kDa, Protein from Thermococcus kodakarensis)
- 23s ribosomal rna (987 kDa, RNA from Thermococcus kodakarensis)
- Predicted exosome subunit, upf0023 family (26 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l15e (22 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l37ae (9 kDa, Protein from Thermococcus kodakarensis)
- Water (18 Da, Ligand)
- 30s ribosomal protein s15 (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l15 (16 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l30 (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l31e (10 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l23 (9 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l13 (16 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l18 (22 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l44e (11 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s2 (23 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s17e (8 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s24e (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l5 (21 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l7ae (13 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l30e (10 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s6e (13 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s8e (14 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l6 (20 kDa, Protein from Thermococcus kodakarensis)
- 5s ribosomal rna (40 kDa, RNA from Thermococcus kodakarensis)
- Unknown ribosomal protein (2 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l22 (17 kDa, Protein from Thermococcus kodakarensis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s27e (7 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s17 (13 kDa, Protein from Thermococcus kodakarensis)
- Nucleic acid-binding protein, containing c2h2 zinc-finger (5 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l10e (21 kDa, Protein from Thermococcus kodakarensis)
- 70s ribosome from thermococcus kodakarensis (Complex from Thermococcus kodakarensis)
- Lsu ribosomal protein l41e (5 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s3ae (23 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l34e (10 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s5 (26 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l14 (15 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l18ae (9 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s12 (16 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l14e (8 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s4 (21 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s11 (15 kDa, Protein from Thermococcus kodakarensis)