EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

sample_name:"nucleic acid" AND xref_links:"alphafold" AND natural_source_ncbi_code:"559292"

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

EMD-0092

Download Map 3D View

Structure of a yeast closed complex with distorted DNA (CCdist)

Release date: Dec. 5, 2018
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 6gym
Q-score: 0.219

Dienemann C, Schwalb B, Schilbach S, Cramer P

Mol Cell (2019) 73 pp. 97-106.e4 [ Pubmed: 30472190 DOI: doi:10.1016/j.molcel.2018.10.014 ]

Sample:

[Show more]

EMD-3846

Download Map 3D View

STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH

Release date: April 25, 2018
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 5oqj
Q-score: 0.249

Schilbach S, Hantsche M, Tegunov D, Dienemann C, Wigge C, Urlaub H, Cramer P

Nature (2017) 551 pp. 204-209 [ Pubmed: 29088706 DOI: doi:10.1038/nature24282 ]

Sample:

Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna repair helicase rad25 (94 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription initiation factor iie subunit alpha (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Initiation factors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna repair helicase rad3 (89 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription initiation factor iia large subunit (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription initiation factor iib (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Magnesium ion (24 Da, Ligand)
Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription factors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Unknown protein (3 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rna polymerase ii transcription factor b subunit 3 (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rna polymerase ii transcription factor b subunit 1 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Pre-initiation complex (pic) (1 MDa, Complex)
Polymerase (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription initiation factor iie subunit beta (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription initiation factor iif subunit beta (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rna polymerase ii transcription factor b subunit 4 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Suppressor of stem-loop protein 1 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nontemplate dna (32 kDa, DNA from synthetic construct)
Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Template dna (32 kDa, DNA from synthetic construct)
Nucleic acid (Complex from synthetic construct)
Rna polymerase ii transcription factor b subunit 2 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rna polymerase ii transcription factor b subunit 5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Iron/sulfur cluster (351 Da, Ligand)
Transcription initiation factor iia subunit 2 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription initiation factor iif subunit alpha (82 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-4301

Download Map 3D View

Structure of the nuclear RNA exosome

Release date: March 21, 2018
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6fsz
Q-score: 0.283

Schuller JM, Falk S, Fromm L, Hurt E, Conti E

Science (2018) 360 pp. 219-222 [ Pubmed: 29519915 DOI: doi:10.1126/science.aar5428 ]

Sample:

Exosome complex component rrp42 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
M-phase phosphoprotein 6 homolog,m-phase phosphoprotein 6 homolog,nuclear exosome-associated rna binding protein,m-phase phosphoprotein 6 homolog (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleic acid (Complex from Saccharomyces cerevisiae)
Exosome complex exonuclease dis3 (113 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Exosome complex component rrp43 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Exosome complex component rrp4 (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Exosome complex component csl4 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nuclear rna exosome (Complex)
Exosome complex component rrp45 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Exosome complex exonuclease rrp6 (84 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Atp-dependent rna helicase dob1 (122 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rna (5'-r(p*ap*ap*ap*ap*up*up*up*ap*ap*ap*up*up*up*up*up*up*up*up*up*up*up*up*u)-3') (7 kDa, RNA from Saccharomyces cerevisiae)
Exosome complex component rrp46 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nuclear rna exosome (Complex from Saccharomyces cerevisiae)
Exosome complex component ski6 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Exosome complex protein lrp1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Exosome complex component rrp40 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Exosome complex component mtr3 (27 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-3955

Download Map 3D View

RNA Polymerase III open pre-initiation complex (OC-PIC)

Release date: Jan. 17, 2018
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6eu0
Q-score: 0.313

Abascal-Palacios G, Ramsay EP, Beuron F, Morris E, Vannini A

Nature (2018) 553 pp. 301-306 [ Pubmed: 29345637 DOI: doi:10.1038/nature25441 ]

Sample:

Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc3 (74 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc6 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Nucleic acid (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription factors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Non-template (21 kDa, DNA from Saccharomyces cerevisiae S288c)
Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Magnesium ion (24 Da, Ligand)
Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription factor tfiiib component b'' (67 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc4 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Zinc ion (65 Da, Ligand)
Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc9 (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Template (21 kDa, DNA from Saccharomyces cerevisiae S288c)
Rna polymerase iii open pre-initiation complex (Complex)
Dna-directed rna polymerase iii subunit rpc7 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Rna polymerase iii (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Transcription factor iiib 70 kda subunit (67 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc8 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc5 (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc2 (129 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Dna-directed rna polymerase iii subunit rpc1 (162 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

EMD-3765

Download Map 3D View

Structure of nucleosome-Chd1 complex

Release date: Oct. 11, 2017
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 5o9g
Q-score: 0.018

Farnung L, Vos SM, Wigge C, Cramer P

Nature (2017) 550 pp. 539-542 [ Pubmed: 29019976 DOI: doi:10.1038/nature24046 ]

Sample:

Histone h2a (14 kDa, Protein from Xenopus laevis)
Protein-nucleic acid complex (Complex)
Histone h4 (11 kDa, Protein from Xenopus laevis)
Dna (162-mer) (64 kDa, DNA from synthetic construct)
Protein-nucleic acid complex (Complex from Saccharomyces cerevisiae S288c)
Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
Adenosine-5'-diphosphate (427 Da, Ligand)
Beryllium trifluoride ion (66 Da, Ligand)
Protein-nucleic acid complex (Complex from synthetic construct)
Protein-nucleic acid complex (Complex from Xenopus laevis)
Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Dna (162-mer) (64 kDa, DNA from synthetic construct)
Chromo domain-containing protein 1 (168 kDa, Protein from Saccharomyces cerevisiae S288c)
Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)

[Show more]

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: