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sample_name:"nucleic acid" AND xref_links:"pdbekb" AND author_name:"H"
Structure of the plant mitochondrial ribosome
Release date: April 15, 2020
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 6xyw
Q-score: 0.359
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 6xyw
Q-score: 0.359
Waltz F, Soufari H, Bochler A, Giege P, Hashem Y
Nat Plants (2020) 6 pp. 377-383 [ Pubmed: 32251374 DOI: doi:10.1038/s41477-020-0631-5 ]
Sample:
- At4g31460/f3l17_30 (24 kDa, Protein from Arabidopsis thaliana)
- Rppr* (47 kDa, Protein from Arabidopsis thaliana)
- Mitochondrial ribosomal protein l51/s25/ci-b8 family protein (16 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s7, mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l27 (16 kDa, Protein from Arabidopsis thaliana)
- At4g05400 (27 kDa, Protein from Arabidopsis thaliana)
- At1g01640 (23 kDa, Protein from Arabidopsis thaliana)
- At1g24240/f3i6_17 (25 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s2, mitochondrial (24 kDa, Protein from Arabidopsis thaliana)
- Expressed protein (22 kDa, Protein from Arabidopsis thaliana)
- At5g40080 (10 kDa, Protein from Arabidopsis thaliana)
- Ms31/ms46 (8 kDa, Protein from Arabidopsis thaliana)
- At3g06320 (6 kDa, Protein from Arabidopsis thaliana)
- Rna (118-mer) (37 kDa, RNA from Arabidopsis thaliana)
- At3g18240 protein (48 kDa, Protein from Arabidopsis thaliana)
- Ms38 (15 kDa, Protein from Arabidopsis thaliana)
- At1g52370 protein (30 kDa, Protein from Arabidopsis thaliana)
- 37s ribosomal protein s27 (11 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l35 (20 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s21 family protein (11 kDa, Protein from Arabidopsis thaliana)
- At2g34520 (18 kDa, Protein from Arabidopsis thaliana)
- At5g09770 (18 kDa, Protein from Arabidopsis thaliana)
- 30s ribosomal protein s16-2, chloroplastic/mitochondrial (15 kDa, Protein from Arabidopsis thaliana)
- Unk-1 (4 kDa, Protein from Arabidopsis thaliana)
- Rna (2842-mer) (918 kDa, RNA from Arabidopsis thaliana)
- 30s ribosomal protein s9, mitochondrial (48 kDa, Protein from Arabidopsis thaliana)
- Unk-4 (2 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s12, mitochondrial (14 kDa, Protein from Arabidopsis thaliana)
- Small ribosomal subunit protein s13, mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- At1g07830/f24b9_7 (16 kDa, Protein from Arabidopsis thaliana)
- Putative ribosomal protein l6 (11 kDa, Protein from Arabidopsis thaliana)
- At1g73940/f2p9_19 (17 kDa, Protein from Arabidopsis thaliana)
- Rppr* (22 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l25/gln-trna synthetase, anti-codon-binding domain-containing protein (27 kDa, Protein from Arabidopsis thaliana)
- F10k1.8 protein (29 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l24 (17 kDa, Protein from Arabidopsis thaliana)
- At5g55140 (12 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l9/rnase h1 (25 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l10 (19 kDa, Protein from Arabidopsis thaliana)
- At4g35490 (16 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein hlp, mitochondrial (18 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s4, mitochondrial (43 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l31 (8 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l3-2, mitochondrial (35 kDa, Protein from Arabidopsis thaliana)
- Translation elongation factor ef1b/ribosomal protein s6 family protein (15 kDa, Protein from Arabidopsis thaliana)
- 60s ribosomal protein l2, mitochondrial (37 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l20 (14 kDa, Protein from Arabidopsis thaliana)
- Rppr* (24 kDa, Protein from Arabidopsis thaliana)
- Cx9c domain-containing protein (10 kDa, Protein from Arabidopsis thaliana)
- At1g14620/t5e21_15 (27 kDa, Protein from Arabidopsis thaliana)
- Nucleic acid-binding, ob-fold-like protein (12 kDa, Protein from Arabidopsis thaliana)
- Adenylyl cyclase (43 kDa, Protein from Arabidopsis thaliana)
- 40s ribosomal protein s15a-5 (14 kDa, Protein from Arabidopsis thaliana)
- At3g51010 (21 kDa, Protein from Arabidopsis thaliana)
- 28s ribosomal s34 protein (15 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein l18e/l15 superfamily protein (31 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l4 (33 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein (11 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein at1g27435/f17l21.30 (8 kDa, Protein from Arabidopsis thaliana)
- 39s ribosomal protein (14 kDa, Protein from Arabidopsis thaliana)
- At4g22000 (15 kDa, Protein from Arabidopsis thaliana)
- Probable ribosomal protein s11, mitochondrial (33 kDa, Protein from Arabidopsis thaliana)
- At5g26800 (12 kDa, Protein from Arabidopsis thaliana)
- At1g15810/f7h2_23 (47 kDa, Protein from Arabidopsis thaliana)
- At5g27820 (12 kDa, Protein from Arabidopsis thaliana)
- At5g49210/k21p3_8 (23 kDa, Protein from Arabidopsis thaliana)
- 3-hydroxyisobutyryl-coa hydrolase-like protein 2, mitochondrial (45 kDa, Protein from Arabidopsis thaliana)
- The large mitoribosomal subunit of the plant mitoribosome (Complex from Arabidopsis thaliana)
- Mitochondrial 28s ribosomal protein s29-like protein (53 kDa, Protein from Arabidopsis thaliana)
- 60s ribosomal protein l5, mitochondrial (21 kDa, Protein from Arabidopsis thaliana)
- At1g64880 (60 kDa, Protein from Arabidopsis thaliana)
- Pentatricopeptide repeat-containing protein pnm1, mitochondrial (59 kDa, Protein from Arabidopsis thaliana)
- Gb|aac32909.1 (48 kDa, Protein from Arabidopsis thaliana)
- 40s ribosomal protein s19, mitochondrial (23 kDa, Protein from Arabidopsis thaliana)
- 30s ribosomal protein s31, mitochondrial (10 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein (22 kDa, Protein from Arabidopsis thaliana)
- Unk-5 (6 kDa, Protein from Arabidopsis thaliana)
- Ribosomal protein s3, mitochondrial (64 kDa, Protein from Arabidopsis thaliana)
- Rppr* (18 kDa, Protein from Arabidopsis thaliana)
- Unk-2 (5 kDa, Protein from Arabidopsis thaliana)
- Unk-6 (2 kDa, Protein from Arabidopsis thaliana)
- 40s ribosomal protein s10, mitochondrial (27 kDa, Protein from Arabidopsis thaliana)
- Pentatricopeptide repeat-containing protein at1g60770 (55 kDa, Protein from Arabidopsis thaliana)
- 50s ribosomal protein l21, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- At1g26740/t24p13_11 (14 kDa, Protein from Arabidopsis thaliana)
- At4g39880 (19 kDa, Protein from Arabidopsis thaliana)
- Pentatricopeptide repeat-containing protein at3g02650, mitochondrial (63 kDa, Protein from Arabidopsis thaliana)
- Unk-3 (4 kDa, Protein from Arabidopsis thaliana)
- Rna (1743-mer) (564 kDa, RNA from Arabidopsis thaliana)
- 60s ribosomal protein l16, mitochondrial (20 kDa, Protein from Arabidopsis thaliana)
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH
Release date: April 25, 2018
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 5oqj
Q-score: 0.249
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 5oqj
Q-score: 0.249
Schilbach S, Hantsche M, Tegunov D, Dienemann C, Wigge C, Urlaub H, Cramer P
Nature (2017) 551 pp. 204-209 [ Pubmed: 29088706 DOI: doi:10.1038/nature24282 ]
Sample:
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna repair helicase rad25 (94 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor iie subunit alpha (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Initiation factors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna repair helicase rad3 (89 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor iia large subunit (32 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor iib (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription factors (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (3 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase ii transcription factor b subunit 3 (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase ii transcription factor b subunit 1 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-initiation complex (pic) (1 MDa, Complex)
- Polymerase (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor iie subunit beta (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor iif subunit beta (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase ii transcription factor b subunit 4 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Suppressor of stem-loop protein 1 (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nontemplate dna (32 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Template dna (32 kDa, DNA from synthetic construct)
- Nucleic acid (Complex from synthetic construct)
- Rna polymerase ii transcription factor b subunit 2 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase ii transcription factor b subunit 5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iron/sulfur cluster (351 Da, Ligand)
- Transcription initiation factor iia subunit 2 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor iif subunit alpha (82 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))