Octahedral small virus-like particles of dengue virus type 2 (local reconstruction)
Resolution: 4.24 Å
EM Method: Single-particle
Fitted PDBs: 9dof
Q-score: 0.295
Johnson A, Dodes Traian M, Walsh Jr RM, Jenni S, Harrison SC
J Virol (2024) pp. e0180924-e0180924 [ DOI: doi:10.1128/jvi.01809-24 Pubmed: 39745459 ]
- Dengue virus type 2 (Virus from dengue virus type 2)
- Protein prm (18 kDa, Protein from dengue virus type 2)
- Glycoprotein e (54 kDa, Protein from dengue virus type 2)
Octahedral small virus-like particles of dengue virus type 2 (octahedral reconstruction)
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 9dog
Q-score: 0.186
Johnson A, Dodes Traian M, Walsh Jr RM, Jenni S, Harrison SC
J Virol (2024) pp. e0180924-e0180924 [ DOI: doi:10.1128/jvi.01809-24 Pubmed: 39745459 ]
- Dengue virus type 2 (Virus from dengue virus type 2)
- Protein prm (18 kDa, Protein from dengue virus type 2)
- Glycoprotein e (54 kDa, Protein from dengue virus type 2)
Tick-borne encephalitis virus (strain HYPR) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
Tick-borne encephalitis virus (strain Neudoerfl) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8puv
Q-score: 0.446
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8ppq
Q-score: 0.334
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
Cryo-EM structure of immature Zika virus
Majowicz SA, Narayanan A, Moustafa IM, Bator CM, Hafenstein SL, Jose J
Viruses (2023) 1 pp. 4- [ DOI: doi:10.1038/s44298-023-00004-2 ]
- E-protein (Protein from Zika virus)
- Zika virus (Virus from Zika virus)
- Prm-protein (Protein from Zika virus)
Structure of dengue virus (DENV2) in complex with prM12, an anti-PrM monoclonal antibody
Resolution: 10.2 Å
EM Method: Single-particle
Fitted PDBs: 8fe3
Q-score: 0.059
A Dowd K, Sirohi D, D Speer S, VanBlargan LA, Chen RE, Mukherjee S, Whitener BM, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Koenig S, Kielian M, Kuhn RJ, Diamond MS, Pierson TC
PNAS (2023) 120 pp. e2218899120-e2218899120 [ Pubmed: 36638211 DOI: doi:10.1073/pnas.2218899120 ]
- Prm12 fab heavy chain (24 kDa, Protein from Mus musculus)
- Envelope protein e (43 kDa, Protein from Dengue virus type 2)
- Dengue virus 2 (Virus from Dengue virus 2)
- Prm protein (9 kDa, Protein from Dengue virus type 2)
- Prm12 fab light chain (23 kDa, Protein from Mus musculus)
Structure of dengue virus (DENV2) in complex with prM13, an anti-PrM monoclonal antibody
Resolution: 9.8 Å
EM Method: Single-particle
Fitted PDBs: 8fe4
Q-score: 0.062
A Dowd K, Sirohi D, D Speer S, VanBlargan LA, Chen RE, Mukherjee S, Whitener BM, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Koenig S, Kielian M, Kuhn RJ, Diamond MS, Pierson TC
PNAS (2023) 120 pp. e2218899120-e2218899120 [ Pubmed: 36638211 DOI: doi:10.1073/pnas.2218899120 ]
- Prm13 fab light chain (23 kDa, Protein from Mus musculus)
- Envelope protein e (43 kDa, Protein from Dengue virus type 2)
- Dengue virus 2 (Virus from Dengue virus 2)
- Prm13 fab heavy chain (23 kDa, Protein from Mus musculus)
- Prm protein (9 kDa, Protein from Dengue virus type 2)
The structure of an infectious immature flavivirus redefines viral architecture and maturation
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7l30
Q-score: 0.418
Newton ND, Hardy JM, Modhiran N, Hugo LE, Amarilla AA, Bibby S, Venugopal H, Harrison JJ, Traves RJ, Hall RA, Hobson-Peters J, Coulibaly F, Watterson D
Sci Adv (2021) 7 [ Pubmed: 33990320 DOI: doi:10.1126/sciadv.abe4507 ]
- Envelope protein e (53 kDa, Protein from Binjari virus)
- Binjari virus (22 MDa, Virus from Binjari virus)
- Prm protein (18 kDa, Protein from Binjari virus)