EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

sample_name:"protein E" AND author_name:"Li Y" AND author_name:"Y" AND xref_links:"cpx"

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

EMD-39956

Download Map 3D View

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Release date: Feb. 12, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8zdb
Q-score: 0.414

Huang Z, Diehl FF, Wang M, Li Y, Song A, Chen FX, Rosa-Mercado NA, Beckmann R, Green R, Cheng J

Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.013 Pubmed: 39947183 ]

Sample:

Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es32 (3 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es26 (13 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us11 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
Ubiquitylated 40s ribosome with riok3 (Complex from Homo sapiens)
18s rrna (602 kDa, RNA from Homo sapiens)
Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
Serine/threonine-protein kinase rio3 (59 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein rack1 (35 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
Ubiquitin (18 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)

[Show more]

EMD-39957

Download Map 3D View

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Release date: Feb. 12, 2025
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8zdc
Q-score: 0.368

Huang Z, Diehl FF, Wang M, Li Y, Song A, Chen FX, Rosa-Mercado NA, Beckmann R, Green R, Cheng J

Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.013 Pubmed: 39947183 ]

Sample:

Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
Pre-rrna-processing protein tsr1 homolog (91 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
Ubiquitylated pre-40s ribosome with riok3 (Complex from Homo sapiens)
Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
Protein ltv1 homolog (54 kDa, Protein from Homo sapiens)
Ubiquitin (8 kDa, Protein from Homo sapiens)
18s rrna (604 kDa, RNA from Homo sapiens)
Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
Rna-binding protein pno1 (27 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us11 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
Rna-binding protein nob1 (46 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
Serine/threonine-protein kinase rio3 (59 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein rack1 (35 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)

[Show more]

EMD-39958

Download Map 3D View

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Release date: Feb. 12, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8zdd
Q-score: 0.396

Huang Z, Diehl FF, Wang M, Li Y, Song A, Chen FX, Rosa-Mercado NA, Beckmann R, Green R, Cheng J

Mol Cell (2025) [ DOI: doi:10.1016/j.molcel.2025.01.013 Pubmed: 39947183 ]

Sample:

Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
Pre-rrna-processing protein tsr1 homolog (91 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
Ubiquitylated pre-40s ribosome with riok3 (Complex from Homo sapiens)
Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
Protein ltv1 homolog (54 kDa, Protein from Homo sapiens)
Ubiquitin (8 kDa, Protein from Homo sapiens)
18s rrna (604 kDa, RNA from Homo sapiens)
Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
Rna-binding protein pno1 (27 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us11 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
Serine/threonine-protein kinase rio3 (59 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein rack1 (35 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)

[Show more]

EMD-23783

Download Map 3D View

LolCDE nucleotide-free

Release date: Aug. 11, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7mdx
Q-score: 0.363

Sharma S, Zhou R, Wan L, Feng S, Song K, Xu C, Li Y, Liao M

Nat Commun (2021) 12 pp. 4687- [ DOI: doi:10.1038/s41467-021-24965-1 ]

Sample:

Lipo-releasing system transmembrane protein lolc (e.c.3.6.3.-), lipoprotein-releasing system transmembrane protein (e.c.3.6.3.-), lipoprotein-releasing system atp-binding protein lold (e.c.7.6.2.-), triacyl-lipoprotein (130 MDa, Complex from Escherichia coli)
Lipoprotein-releasing system transmembrane protein lole (44 kDa, Protein from Escherichia coli)
Lipoprotein-releasing system transmembrane protein lolc (42 kDa, Protein from Escherichia coli)
Pentadecanoic acid (242 Da, Ligand)
Lipoprotein-releasing system atp-binding protein lold (23 kDa, Protein from Escherichia coli)
Triacyl-lipoprotein (492 Da, Protein from Escherichia coli)
(2r)-2-(tridecanoyloxy)propyl hexadecanoate (526 Da, Ligand)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: