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sample_name:"protein E" AND author_orcid:"0000-0001-6562-7734" AND software_ft:"RELION"

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EMD-19541

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Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Release date: Sept. 11, 2024
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8rw1
Q-score: 0.404

Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T

Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]

Sample:

Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Initiation factors eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Methionine (149 Da, Ligand)
Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Magnesium ion (24 Da, Ligand)
Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
Mrna (Complex from Kluyveromyces lactis)
Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Zinc ion (65 Da, Ligand)
Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Water (18 Da, Ligand)
Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))

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EMD-19807

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Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Release date: Sept. 11, 2024
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8s8j

Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T

Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]

Sample:

Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Eukaryotic translation initiation factor 5 (45 kDa, Protein from Saccharomyces cerevisiae S288C)
Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Methionine (149 Da, Ligand)
Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Magnesium ion (24 Da, Ligand)
Initiation factor eif5 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
Mrna (Complex from Kluyveromyces lactis)
Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Zinc ion (65 Da, Ligand)
Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Water (18 Da, Ligand)
Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))

[Show more]

Sort by: Download

Showing 1 - 2 of 2. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: