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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

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and development of technology

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new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"protein E" AND microscope_name:"FEI TALOS ARCTICA" AND author_name:"L"

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EMD-17330

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48S late-stage initiation complex with non methylated mRNA

Release date: March 20, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8p09
Q-score: 0.494

Guca E, Alarcon R, Palo MZ, Santos L, Alonso-Gil S, Davyt M, de Lima LHF, Boissier F, Das S, Zagrovic B, Puglisi JD, Hashem Y, Ignatova Z

Mol Cell (2024) 84 pp. 584-595.e6 [ DOI: doi:10.1016/j.molcel.2023.12.028 Pubmed: 38244546 ]

Sample:

Mrna (2 kDa, RNA from Oryctolagus cuniculus)
40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es1 (24 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
Eukaryotic translation initiation factor 2 subunit 1 (32 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
Initiator methionylated trna (24 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s8 (23 kDa, Protein from Oryctolagus cuniculus)
Eukaryotic translation initiation factor 4c (12 kDa, Protein from Oryctolagus cuniculus)
Magnesium ion (24 Da, Ligand)
40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
48s late-stage initiation complex with non methylated mrna (Complex from Oryctolagus cuniculus)
40s ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s2 (29 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein sa (23 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
18s ribosomal rna (601 kDa, RNA from Oryctolagus cuniculus)
Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
Ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
Atp binding cassette subfamily e member 1 (66 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein s26 (12 kDa, Protein from Oryctolagus cuniculus)
40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)

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EMD-16127

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Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Release date: Jan. 10, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8bn3
Q-score: 0.597

Rauscher R, Eggers C, Dimitrova-Paternoga L, Shankar V, Rosina A, Cristodero M, Paternoga H, Wilson DN, Leidel SA, Polacek N

Nucleic Acids Res (2024) 52 pp. 4021-4036 [ Pubmed: 38324474 DOI: doi:10.1093/nar/gkae067 ]

Sample:

60s ribosomal protein l43-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s25 (8 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps31 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (21 kDa, Protein from Saccharomyces cerevisiae)
Small ribosomal subunit protein es21a (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s23-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (17 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8 (21 kDa, Protein from Saccharomyces cerevisiae)
Stm1 isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
Small ribosomal subunit protein es1 (24 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Dormant yeast 80s ribosome (3 MDa, Complex from Saccharomyces cerevisiae)
Small ribosomal subunit protein us17a (17 kDa, Protein from Saccharomyces cerevisiae)
Eukaryotic translation initiation factor 5a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (25 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)
Small ribosomal subunit protein us2a (27 kDa, Protein from Saccharomyces cerevisiae)
Ribosomal protein l15 (24 kDa, Protein from Saccharomyces cerevisiae)
Rpl9a isoform 1 (21 kDa, Protein from Saccharomyces cerevisiae)
Es17 (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (10 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
Large ribosomal subunit protein ul24a (14 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (22 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
Small ribosomal subunit protein rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
Small ribosomal subunit protein es10a (11 kDa, Protein from Saccharomyces cerevisiae)
Large ribosomal subunit protein el37a (9 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (23 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (2 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-b (13 kDa, Protein from Saccharomyces cerevisiae)
Small ribosomal subunit protein es6a (25 kDa, Protein from Saccharomyces cerevisiae)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
Small ribosomal subunit protein es4a (29 kDa, Protein from Saccharomyces cerevisiae)
Large ribosomal subunit protein el34a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (11 kDa, Protein from Saccharomyces cerevisiae)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
18s ribosomal rna (559 kDa, RNA from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
Water (18 Da, Ligand)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (16 kDa, Protein from Saccharomyces cerevisiae)
Potassium ion (39 Da, Ligand)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s3 (24 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l40-a (6 kDa, Protein from Saccharomyces cerevisiae)
Rps26b isoform 1 (11 kDa, Protein from Saccharomyces cerevisiae)
Large ribosomal subunit protein el41b (3 kDa, Protein from Saccharomyces cerevisiae)
25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l1-a (24 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s18-a (16 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rpl11b isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
Small ribosomal subunit protein us4a (21 kDa, Protein from Saccharomyces cerevisiae)
Spermidine (145 Da, Ligand)

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EMD-9542

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Zika virus complexed with a neutralizing antibody Z23-Fab

Release date: Nov. 30, 2016
Resolution: 9.4 Å
EM Method: Single-particle
Fitted PDBs: 5gzr
Q-score: 0.102

Wang Q, Yang H, Liu X, Dai L, Ma T, Qi J, Wong G, Peng R, Liu S, Li J, Li S, Song J, Liu J, He J, Yuan H, Xiong Y, Liao Y, Li J, Yang J, Tong Z, Griffin BD, Bi Y, Liang M, Xu X, Qin C, Cheng G, Zhang X, Wang P, Qiu X, Kobinger G, Shi Y, Yan J, Gao GF

Sci Transl Med (2016) 8 pp. 369ra179-369ra179 [ DOI: doi:10.1126/scitranslmed.aai8336 Pubmed: 27974667 ]

Sample:

Structural protein e (54 kDa, Protein from Zika virus)
Zika virus (Complex from Zika virus)
Z23 fab light chain (23 kDa, Protein from Homo sapiens)
Z23 fab heavy chain (23 kDa, Protein from Homo sapiens)
Strutural protein m (8 kDa, Protein from Zika virus)
Neutralizing antibody z23 fab (Complex)
Zika virus in complex with a neutralizing antibody z23 fab (Complex)

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Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

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EMDB [3]

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