Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6az3
Q-score: 0.599
Shalev-Benami M, Zhang Y, Rozenberg H, Nobe Y, Taoka M, Matzov D, Zimmerman E, Bashan A, Isobe T, Jaffe CL, Yonath A, Skiniotis G
Nat Commun (2017) 8 pp. 1589-1589 [ Pubmed: 29150609 DOI: doi:10.1038/s41467-017-01664-4 ]
- Ribosomal protein ul13 (25 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Leishmania donovani)
- Ribosomal protein l19e family protein (22 kDa, Protein from Leishmania donovani)
- Rrna alpha (575 kDa, RNA from Leishmania donovani)
- Ribosomal protein ul24 (13 kDa, Protein from Leishmania donovani)
- Ribosomal protein el24 (7 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l36, putative (11 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l7 family protein (26 kDa, Protein from Leishmania donovani)
- Ribosomal protein l35ae family protein (14 kDa, Protein from Leishmania donovani)
- Rrna epsilon (42 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l34, putative (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l17, putative (17 kDa, Protein from Leishmania donovani)
- 60s_ribosomal_protein_l35_putative/genedb:lmjf.26.2330/genedb:lmjf.26.2340 (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal subunit protein l31, putative (13 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l11 (l5, l16) (19 kDa, Protein from Leishmania donovani)
- Rrna 5s (37 kDa, RNA from Leishmania donovani)
- 60s_ribosomal_protein_l32/genedb:lmjf.21.1720 (15 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul2 (27 kDa, Protein from Leishmania donovani)
- Ribosomal l38e family protein (8 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania donovani)
- Paromomycin (615 Da, Ligand)
- Ribosomal protein l1a, putative (40 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l21, putative (17 kDa, Protein from Leishmania donovani)
- Ribosomal l27e family protein (15 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l44, putative (11 kDa, Protein from Leishmania donovani)
- Water (18 Da, Ligand)
- Ribosomal protein el6 (21 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l30 (10 kDa, Protein from Leishmania donovani)
- Ribosomal protein el41 (4 kDa, Protein from Leishmania donovani)
- Rrna 5.8s (54 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l18, putative (21 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul3 (45 kDa, Protein from Leishmania donovani)
- Rrna delta (59 kDa, RNA from Leishmania donovani)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l22, putative (14 kDa, Protein from Leishmania donovani)
- Leishmania donovani 91s ribosome lsu (Complex from Leishmania donovani)
- Rrna gamma (67 kDa, RNA from Leishmania donovani)
- Rrna beta (492 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l37 (9 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l27a/l29, putative (16 kDa, Protein from Leishmania donovani)
- Rrna zeta (22 kDa, RNA from Leishmania donovani)
- Ubiquitin-60s ribosomal protein l40 (5 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l28, putative (15 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l29 (7 kDa, Protein from Leishmania donovani)
- Probable 60s ribosomal protein l14 (17 kDa, Protein from Leishmania donovani)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l7a (39 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l23a, putative (13 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Leishmania donovani)
- Ribosomal protein el13 (23 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Leishmania donovani)
Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree
Resolution: 22.0 Å
EM Method: Single-particle
Fitted PDBs: 5y0a
Q-score: 0.044
Wang J, Bardelli M, Espinosa DA, Pedotti M, Ng TS, Bianchi S, Simonelli L, Lim EXY, Foglierini M, Zatta F, Jaconi S, Beltramello M, Cameroni E, Fibriansah G, Shi J, Barca T, Pagani I, Rubio A, Broccoli V, Vicenzi E, Graham V, Pullan S, Dowall S, Hewson R, Jurt S, Zerbe O, Stettler K, Lanzavecchia A, Sallusto F, Cavalli A, Harris E, Lok SM, Varani L, Corti D
Cell (2017) 171 pp. 229-241.e15 [ Pubmed: 28938115 DOI: doi:10.1016/j.cell.2017.09.002 ]
- Zika virus complexed with fab of a human monoclonal antibody named zka190 (Complex from Zika virus)
- Zika virus (Complex)
- Protein e (44 kDa, Protein from Zika virus (strain Mr 766))
- Variable region of fab zka190 heavy chain (14 kDa, Protein from Homo sapiens)
- Fab zka190 (Complex)
- Variable region of fab zka190 light chain (11 kDa, Protein from Homo sapiens)
Large subunit of Toxoplasma gondii ribosome
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 5xxb
Q-score: 0.507
Li Z, Guo Q, Zheng L, Ji Y, Xie YT, Lai DH, Lun ZR, Suo X, Gao N
Cell Res (2017) 27 pp. 1275-1288 [ Pubmed: 28809395 DOI: doi:10.1038/cr.2017.104 ]
- Ribosomal protein el40 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul29 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el43 (10 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul24 (16 kDa, Protein from Toxoplasma gondii)
- 5.8s rna (50 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein ul15 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul23 (18 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el38 (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el21 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el29 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el19 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el18 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el28 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el30 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul3 (44 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul16 (24 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el14 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul6 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el15 (24 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el24 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul14 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el22 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el32 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul4 (45 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el8 (31 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el6 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul5 (20 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el36 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul30 (30 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el42 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul22 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul2 (28 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el37 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el33 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el34 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el39 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul13 (31 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el27 (16 kDa, Protein from Toxoplasma gondii)
- 25s rna (1 MDa, RNA from Toxoplasma gondii)
- Large subunit of toxoplasma gondii ribosome (Complex from Toxoplasma gondii)
- 5s rna (39 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein el31 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el20 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el13 (39 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul18 (35 kDa, Protein from Toxoplasma gondii)
Small subunit of Toxoplasma gondii ribosome
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 5xxu
Q-score: 0.444
Li Z, Guo Q, Zheng L, Ji Y, Xie YT, Lai DH, Lun ZR, Suo X, Gao N
Cell Res (2017) 27 pp. 1275-1288 [ Pubmed: 28809395 DOI: doi:10.1038/cr.2017.104 ]
- Ribosomal protein es12 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us10 (25 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es25 (18 kDa, Protein from Toxoplasma gondii)
- Small subunit of toxoplasma gondii ribosome (Complex from Toxoplasma gondii)
- Ribosomal protein us9 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es27 (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es10 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es7 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us7 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es19 (18 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us8 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us14 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us5 (29 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es6 (29 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us3 (26 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us13 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es4 (30 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us15 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us17 (18 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us19 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es28 (7 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us2 (31 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es31 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us4 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el41 (5 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es1 (29 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es26 (12 kDa, Protein from Toxoplasma gondii)
- 18s rna (576 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein es8 (23 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es24 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us12 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es17 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein us11 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es30 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein es21 (9 kDa, Protein from Toxoplasma gondii)
Cryo-EM Structure of Immature Zika Virus
Resolution: 9.1 Å
EM Method: Single-particle
Fitted PDBs: 5u4w
Q-score: 0.079
Prasad VM, Miller AS, Klose T, Sirohi D, Buda G, Jiang W, Kuhn RJ, Rossmann MG
Nat Struct Mol Biol (2017) 24 pp. 184-186 [ DOI: doi:10.1038/nsmb.3352 Pubmed: 28067914 ]
- Beta-d-mannopyranose (180 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pr domain (9 kDa, Protein from Zika virus)
- E protein (44 kDa, Protein from Zika virus)
- Transmembrane domains (Complex from Zika virus)
- M protein (5 kDa, Protein from Zika virus)
- Zika virus (Virus from Zika virus)
- Protein e (6 kDa, Protein from Zika virus)