The base complex of the AcMNPV baculovirus nucleocapsid (Class 1, localised reconstruction)
Resolution: 4.71 Å
EM Method: Single-particle
Fitted PDBs: 8vwi
Q-score: 0.252
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco A, Krupovic M, Coulibaly F
To Be Published
- Zinc ion (65 Da, Ligand)
- Major capsid protein (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Occlusion-derived virus envelope protein e27 (33 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Capsid-associated protein vp80 (79 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac142 (55 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- 38k (ac98) protein in p143-lef5 intergenic region (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein c42 (41 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac109 (44 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Autographa californica multiple nucleopolyhedrovirus (Virus from Autographa californica multiple nucleopolyhedrovirus)
The base complex of the AcMNPV baculovirus nucleocapsid (Class 2, localised reconstruction)
Resolution: 4.78 Å
EM Method: Single-particle
Fitted PDBs: 8vwj
Q-score: 0.243
Johnstone BA, Hardy JM, Ha J, Butkovic A, Koszalka P, Accurso C, Venugopal H, de Marco A, Krupovic M, Coulibaly F
To Be Published
- Zinc ion (65 Da, Ligand)
- Major capsid protein (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Occlusion-derived virus envelope protein e27 (33 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Capsid-associated protein vp80 (79 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac142 (55 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein c42 (41 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Protein ac109 (44 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- 38k (ac98) (38 kDa, Protein from Autographa californica multiple nucleopolyhedrovirus)
- Autographa californica multiple nucleopolyhedrovirus (Virus from Autographa californica multiple nucleopolyhedrovirus)
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 9fk0
Q-score: 0.415
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- Lgtv with tbev prme (Virus)
- Small envelope protein m (Complex from tick-borne encephalitis virus-European subtype)
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- Genome polyprotein,envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
- Genome polyprotein (8 kDa, Protein from tick-borne encephalitis virus-European subtype)
- Envelope protein e (Complex from tick-borne encephalitis virus-European subtype)
LGTV TP21. Langat virus, strain TP21
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 9foj
Q-score: 0.332
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- Envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
- Langat virus (strain tp21) (Virus from Langat virus (strain TP21))
- Small envelope protein m (8 kDa, Protein from Langat virus (strain TP21))
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
Structure of Semliki Forest virus VLP in complex with VLDLR LA2
Abraham J, Yang P, Li W, Fan X, Pan J
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Capsid protein (16 kDa, Protein from Semliki Forest virus)
- Semliki forest virus (Virus from Semliki Forest virus)
- Glycoprotein e2 (46 kDa, Protein from Semliki Forest virus)
- Assembly protein e3 (6 kDa, Protein from Semliki Forest virus)
- Glycoprotein e1 (47 kDa, Protein from Semliki Forest virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
Tick-borne encephalitis virus (strain HYPR) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
Tick-borne encephalitis virus (strain Neudoerfl) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8puv
Q-score: 0.446
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8ppq
Q-score: 0.334
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
Structure of dengue virus (DENV2) in complex with prM12, an anti-PrM monoclonal antibody
Resolution: 10.2 Å
EM Method: Single-particle
Fitted PDBs: 8fe3
Q-score: 0.059
A Dowd K, Sirohi D, D Speer S, VanBlargan LA, Chen RE, Mukherjee S, Whitener BM, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Koenig S, Kielian M, Kuhn RJ, Diamond MS, Pierson TC
PNAS (2023) 120 pp. e2218899120-e2218899120 [ Pubmed: 36638211 DOI: doi:10.1073/pnas.2218899120 ]
- Envelope protein e (43 kDa, Protein from Dengue virus type 2)
- Dengue virus 2 (Virus from Dengue virus 2)
- Prm12 fab heavy chain (24 kDa, Protein from Mus musculus)
- Prm protein (9 kDa, Protein from Dengue virus type 2)
- Prm12 fab light chain (23 kDa, Protein from Mus musculus)