70S-PHIKZ014 PHIKZ phage protein occupied ribosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8cd1
Q-score: 0.461
Gerovac M, Chihara K, Wicke L, Bottcher B, Lavigne R, Vogel J
Nat Microbiol (2024) 9 pp. 787-800 [ Pubmed: 38443577 DOI: doi:10.1038/s41564-024-01616-x ]
- 23s rrna (935 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s2 (27 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l19 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l25 (21 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 70s-phikz014 phikz phage hijacked ribosome (Complex from Pseudomonas aeruginosa PAO1H2O)
- 16s rrna (494 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s6 (16 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s11 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s16 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s19 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Large ribosomal subunit protein ul22 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s21 (8 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Trna (24 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s18 (8 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l29 (7 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l17 (14 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s5 (17 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s17 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s3 (25 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l13 (16 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l28 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l5 (20 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 5s rrna (38 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s10 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s13 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Phikz014 (43 kDa, Protein from Pseudomonas phage phiKZ)
- 50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s15 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l31 (7 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l27 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l9 (15 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l6 (19 kDa, Protein from Pseudomonas aeruginosa PAO1)
Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging
Resolution: 10.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8p5d
Q-score: 0.088
McLaren M, Conners R, Isupov MN, Gil-Diez P, Gambelli L, Gold VAM, Walter A, Connell SR, Williams B, Daum B
Nat Microbiol (2023) 8 pp. 1834-1845 [ Pubmed: 37709902 DOI: doi:10.1038/s41564-023-01469-w ]
- 40s ribosomal protein s4 (31 kDa, Protein from Spraguea lophii 42 110)
- Es27 (9 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s2 (27 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l3 (12 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l23a (12 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l21 (18 kDa, Protein from Spraguea lophii 42 110)
- Ubiquitin/40s ribosomal protein s27a fusion (16 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s9 (21 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l13 (19 kDa, Protein from Spraguea lophii 42 110)
- S60 ribosomal protein l10 (25 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l4 (37 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l13a (22 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l9 (21 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l27 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l22 (12 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l20 (20 kDa, Protein from Spraguea lophii 42 110)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l19 (19 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein s21e (7 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s8 (19 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l8 (27 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l8 (23 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s5 (21 kDa, Protein from Spraguea lophii 42 110)
- Es1 (25 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l3 (44 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l35a (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s24 (17 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s20 (13 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s7 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s0 (26 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s14 (14 kDa, Protein from Spraguea lophii 42 110)
- Es17 (14 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l23 (15 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l39 (6 kDa, Protein from Spraguea lophii 42 110)
- Ubiquitin (14 kDa, Protein from Spraguea lophii 42 110)
- Rna 5s (38 kDa, RNA from Spraguea lophii 42 110)
- Ul15 (16 kDa, Protein from Spraguea lophii 42 110)
- Us12 (15 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l24e (15 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l26 (15 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s26 (11 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l6 (20 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l36 (11 kDa, Protein from Spraguea lophii 42 110)
- Rna 28s (849 kDa, RNA from Spraguea lophii 42 110)
- 60s ribosomal protein l17 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s18 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l32 (16 kDa, Protein from Spraguea lophii 42 110)
- Guanine nucleotide binding protein beta subunit (36 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l34 (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s29 (7 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l11 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s12 (14 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s25 (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l18 (21 kDa, Protein from Spraguea lophii 42 110)
- El37 (10 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s19 (16 kDa, Protein from Spraguea lophii 42 110)
- Es28 (7 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l7 (27 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal l29 protein (fragment),ribosomal l29 protein (fragment),ribosomal l29 protein (fragment),ribosomal l29 protein (14 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s6 (26 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s16 (16 kDa, Protein from Spraguea lophii 42 110)
- Rna 16s (444 kDa, RNA from Spraguea lophii 42 110)
- Ribosomal protein l15 (24 kDa, Protein from Spraguea lophii 42 110)
- Dnl-type domain-containing protein (17 kDa, Protein from Spraguea lophii 42 110)
- Ribosome (Complex from Spraguea lophii 42 110)
- 40s ribosomal protein s15a (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l44 (11 kDa, Protein from Spraguea lophii 42 110)
- Transposase (13 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l37a (10 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s13 (16 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s10 (12 kDa, Protein from Spraguea lophii 42 110)
- Es30 (6 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein s19 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l5 (33 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s3 (27 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l31 (12 kDa, Protein from Spraguea lophii 42 110)
Spraguea lophii ribosome dimer
Resolution: 14.3 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8p60
Q-score: 0.054
McLaren M, Conners R, Isupov MN, Gil-Diez P, Gambelli L, Gold VAM, Walter A, Connell SR, Williams B, Daum B
Nat Microbiol (2023) 8 pp. 1834-1845 [ Pubmed: 37709902 DOI: doi:10.1038/s41564-023-01469-w ]
- 60s ribosomal protein l19 (19 kDa, Protein from Spraguea lophii 42 110)
- Rna 28s (849 kDa, RNA from Spraguea lophii 42 110)
- Ribosomal protein l23 (15 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s7 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s15a (14 kDa, Protein from Spraguea lophii 42 110)
- Ribosome (Complex from Spraguea lophii 42 110)
- Dnl-type domain-containing protein (17 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s2 (27 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s1 (25 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein s12/s23 (15 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l35a (12 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l24e (15 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s25 (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l17 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s14 (14 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l15 (24 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l13 (19 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l11 (19 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l22 (12 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l5 (33 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s16 (16 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l37 (10 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l27 (18 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s26 (11 kDa, Protein from Spraguea lophii 42 110)
- Ubiquitin/40s ribosomal protein s27a fusion (16 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s13 (16 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s8 (19 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l18 (21 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s4 (31 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein s21e (7 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l37a (10 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l7 (27 kDa, Protein from Spraguea lophii 42 110)
- S60 ribosomal protein l10 (25 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s27 (9 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l36 (11 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l9 (21 kDa, Protein from Spraguea lophii 42 110)
- Guanine nucleotide binding protein beta subunit (36 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l13a (22 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s20 (13 kDa, Protein from Spraguea lophii 42 110)
- Rna 16s (444 kDa, RNA from Spraguea lophii 42 110)
- 40s ribosomal protein s19 (16 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l3 (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s28 (7 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l8 (23 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l8 (27 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein s19 (18 kDa, Protein from Spraguea lophii 42 110)
- Rna 5s (38 kDa, RNA from Spraguea lophii 42 110)
- 60s ribosomal protein l31 (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s10 (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s0 (26 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal l29 protein (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l4 (37 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s5 (21 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s24 (17 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l34 (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s9 (21 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l39 (6 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l44 (11 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s6 (26 kDa, Protein from Spraguea lophii 42 110)
- Ubiquitin (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l23a (12 kDa, Protein from Spraguea lophii 42 110)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l26 (15 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s18 (18 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s11 (18 kDa, Protein from Spraguea lophii 42 110)
- Transposase (13 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l3 (44 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l18e/l15p (16 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l32 (16 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s12 (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l6 (20 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s3 (27 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l21 (18 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s17 (14 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s29 (7 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l20 (20 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s30 (6 kDa, Protein from Spraguea lophii 42 110)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 7qca
Q-score: 0.538
McLaren M, Conners R, Isupov MN, Gil-Diez P, Gambelli L, Gold VAM, Walter A, Connell SR, Williams B, Daum B
Nat Microbiol (2023) [ DOI: doi:10.1038/s41564-023-01469-w ]
- 40s ribosomal protein s4 (31 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s2 (27 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l3 (12 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal l29 protein (14 kDa, Protein from Spraguea lophii 42 110)
- El14 lm0 (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l23a (12 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l21 (18 kDa, Protein from Spraguea lophii 42 110)
- Ubiquitin/40s ribosomal protein s27a fusion (16 kDa, Protein from Spraguea lophii 42 110)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s9 (21 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l13 (19 kDa, Protein from Spraguea lophii 42 110)
- Rna ssu (444 kDa, RNA from Spraguea lophii 42 110)
- Us12 sx0 (15 kDa, Protein from Spraguea lophii 42 110)
- S60 ribosomal protein l10 (25 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l4 (37 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l13a (22 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l9 (21 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l27 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l22 (12 kDa, Protein from Spraguea lophii 42 110)
- Es27 sbb (9 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l20 (20 kDa, Protein from Spraguea lophii 42 110)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l19 (19 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein s21e (7 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s8 (19 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l8 (27 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l8 (23 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s5 (21 kDa, Protein from Spraguea lophii 42 110)
- El37 ljj (10 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l3 (44 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l35a (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s24 (17 kDa, Protein from Spraguea lophii 42 110)
- Es17 sr0 (14 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s20 (13 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s7 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s0 (26 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s14 (14 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l23 (15 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l39 (6 kDa, Protein from Spraguea lophii 42 110)
- Es30 see (6 kDa, Protein from Spraguea lophii 42 110)
- Ubiquitin (14 kDa, Protein from Spraguea lophii 42 110)
- Rna 5s (38 kDa, RNA from Spraguea lophii 42 110)
- Ribosomal protein l24e (15 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l26 (15 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s26 (11 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l6 (20 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l36 (11 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l17 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s18 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l32 (16 kDa, Protein from Spraguea lophii 42 110)
- Guanine nucleotide binding protein beta subunit (36 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l34 (12 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s29 (7 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l11 (19 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s12 (14 kDa, Protein from Spraguea lophii 42 110)
- Es1 sb0 (25 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s25 (14 kDa, Protein from Spraguea lophii 42 110)
- Ul15 laa (16 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l18 (21 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s19 (16 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l7 (27 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s16 (16 kDa, Protein from Spraguea lophii 42 110)
- Ribosomal protein l15 (24 kDa, Protein from Spraguea lophii 42 110)
- Es28 scc (7 kDa, Protein from Spraguea lophii 42 110)
- Ribosome (Complex from Spraguea lophii 42 110)
- 40s ribosomal protein s15a (14 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l44 (11 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s6 (26 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l37a (10 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s13 (16 kDa, Protein from Spraguea lophii 42 110)
- Rna 23s (849 kDa, RNA from Spraguea lophii 42 110)
- 40s ribosomal protein s10 (12 kDa, Protein from Spraguea lophii 42 110)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein s19 (18 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l5 (33 kDa, Protein from Spraguea lophii 42 110)
- 40s ribosomal protein s3 (27 kDa, Protein from Spraguea lophii 42 110)
- 60s ribosomal protein l31 (12 kDa, Protein from Spraguea lophii 42 110)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6tbv
Q-score: 0.614
Herrero Del Valle A, Seip B, Cervera-Marzal I, Sacheau G, Seefeldt AC, Innis CA
Nat Microbiol (2020) 5 pp. 554-561 [ DOI: doi:10.1038/s41564-020-0669-1 Pubmed: 32094585 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- Arg-trna located in the p-site (Complex from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal subunit (Complex from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- Escherichia coli ribosome-spefl complex stalled in response to l-ornithine (Complex)
- Zinc ion (65 Da, Ligand)
- 23s rrna (939 kDa, RNA from Escherichia coli K-12)
- 16s rrna (497 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- Mrna (Complex from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- Spefl (4 kDa, Protein from Escherichia coli K-12)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal subunit (Complex from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- Mrna (2 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- Water (18 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- P-site arg-trna (24 kDa, RNA from Escherichia coli K-12)
- L-ornithine (132 Da, Ligand)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli K-12)
- Spefl peptide (Complex from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 5s rrna (38 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli K-12)
- Unknown atom or ion (35 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6tc3
Q-score: 0.602
Herrero Del Valle A, Seip B, Cervera-Marzal I, Sacheau G, Seefeldt AC, Innis CA
Nat Microbiol (2020) 5 pp. 554-561 [ DOI: doi:10.1038/s41564-020-0669-1 Pubmed: 32094585 ]
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- L-ornithine (132 Da, Ligand)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- Spefl peptide (Complex from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- Mrna (2 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- P-site arg-trna (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli K-12)
- 23s rrna (939 kDa, RNA from Escherichia coli K-12)
- 5s rrna (38 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- Spefl (4 kDa, Protein from Escherichia coli K-12)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
- Escherichia coli ribosome-spefl complex stalled in response to l-ornithine (Complex)
- 50s subunit (Complex from Escherichia coli K-12)
- Arg-trna located in the p-site (Complex from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 16s rrna (497 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- Mrna (Complex from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 30s subunit (Complex from Escherichia coli K-12)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
- Unknown atom or ion (35 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6h4n
Q-score: 0.523
Beckert B, Turk M, Czech A, Berninghausen O, Beckmann R, Ignatova Z, Plitzko JM, Wilson DN
Nat Microbiol (2018) 3 pp. 1115-1121 [ DOI: doi:10.1038/s41564-018-0237-0 Pubmed: 30177741 ]
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli BW25113)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s7 (18 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli BW25113)
- Trna (24 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli BW25113)
- Structure of a hibernating 100s ribosome reveals an inactive conformation of the ribosomal protein s1 (Complex from Escherichia coli BW25113)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s1 (61 kDa, Protein from Escherichia coli BW25113)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli BW25113)
- Ribosome hibernation promoting factor (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli BW25113)
- Rna (5'-r(p*cp*up*cp*cp*u)-3') (1 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli BW25113)
- Ribosome modulation factor (6 kDa, Protein from Escherichia coli BW25113)
Resolution: 7.9 Å
EM Method: Single-particle
Fitted PDBs: 6h58
Q-score: 0.122
Beckert B, Turk M, Czech A, Berninghausen O, Beckmann R, Ignatova Z, Plitzko JM, Wilson DN
Nat Microbiol (2018) 3 pp. 1115-1121 [ DOI: doi:10.1038/s41564-018-0237-0 Pubmed: 30177741 ]
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli BW25113)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli BW25113)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s7 (18 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli BW25113)
- Trna mixture (24 kDa, RNA from Escherichia coli BW25113)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli BW25113)
- Structure of a hibernating 100s ribosome reveals an inactive conformation of the ribosomal protein s1 (Complex from Escherichia coli BW25113)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s1 (61 kDa, Protein from Escherichia coli BW25113)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli BW25113)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli BW25113)
- Ribosome hibernation promoting factor (10 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli BW25113)
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli BW25113)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli BW25113)
- Ribosome modulation factor (6 kDa, Protein from Escherichia coli BW25113)
Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquine
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5umd
Q-score: 0.46
Wong W, Bai XC, Sleebs BE, Triglia T, Brown A, Thompson JK, Jackson KE, Hanssen E, Marapana DS, Fernandez IS, Ralph SA, Cowman AF, Scheres SH, Baum J
Nat Microbiol (2017) 2 pp. 17031-17031 [ Pubmed: 28288098 DOI: doi:10.1038/nmicrobiol.2017.31 ]
- 60s ribosomal protein l35ae, putative (16 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l13, putative (23 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l23 (22 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l26, putative (14 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l4 (46 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l7, putative (30 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l21 (18 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l27a, putative (16 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l22, putative (16 kDa, Protein from Plasmodium falciparum 3D7)
- 28s ribosomal rna (1 MDa, RNA from Plasmodium falciparum 3D7)
- 60s ribosomal protein l6-2, putative (25 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Plasmodium falciparum 3D7)
- Ribosomal protein l15 (24 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l18a (21 kDa, Protein from Plasmodium falciparum 3D7)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l37a (10 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l28 (14 kDa, Protein from Plasmodium falciparum 3D7)
- Ribosomal protein l37 (10 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l27 (16 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l38 (10 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l6, putative (21 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l31 (14 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l34 (17 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l24, putative (19 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l3 (44 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l29, putative (8 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l36 (12 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l11a, putative (20 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l41 (5 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l35, putative (14 kDa, Protein from Plasmodium falciparum 3D7)
- (11r,12s)- mefloquine (378 Da, Ligand)
- 60s ribosomal protein l19 (21 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l10, putative (25 kDa, Protein from Plasmodium falciparum 3D7)
- Plasmodium falciparum 80s ribosome bound to mefloquine (4 MDa, Complex from Plasmodium falciparum 3D7)
- 60s ribosomal protein l7-3, putative (32 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l30e, putative (11 kDa, Protein from Plasmodium falciparum 3D7)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l32 (15 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l23, putative (15 kDa, Protein from Plasmodium falciparum 3D7)
- 5.8s ribosomal rna (51 kDa, RNA from Plasmodium falciparum 3D7)
- 60s ribosomal protein l17, putative (23 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l18-2, putative (21 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l39 (6 kDa, Protein from Plasmodium falciparum 3D7)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l13 (25 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l44 (12 kDa, Protein from Plasmodium falciparum 3D7)
- 5s ribosomal rna (38 kDa, RNA from Plasmodium falciparum 3D7)
- 60s ribosomal protein l2 (28 kDa, Protein from Plasmodium falciparum 3D7)
- 60s ribosomal protein l14, putative (19 kDa, Protein from Plasmodium falciparum 3D7)