M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7s0s
Q-score: 0.383
Laughlin ZT, Nandi S, Dey D, Zelinskaya N, Witek MA, Srinivas P, Nguyen HA, Kuiper EG, Comstock LR, Dunham CM, Conn GL
PNAS (2022) 119 pp. e2120352119-e2120352119 [ DOI: doi:10.1073/pnas.2120352119 Pubmed: 35357969 ]
- 50s ribosomal protein l13 (16 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l17 (13 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l22 (12 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycolicibacterium smegmatis)
- Mtb tlya bound to msg 50s ribosomal subunit modified at c2144 with sam analog nm6. (Complex)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l30 (6 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l10 (13 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l23 (10 kDa, Protein from Mycolicibacterium smegmatis)
- Ribosomal protein bl37 (2 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l27 (8 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l33 (5 kDa, Protein from Mycolicibacterium smegmatis)
- 50s (Complex from Mycolicibacterium smegmatis)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycolicibacterium smegmatis)
- 5s rrna (38 kDa, RNA from Mycolicibacterium smegmatis)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l25 (20 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l31 (5 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l21 (10 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l29 (7 kDa, Protein from Mycolicibacterium smegmatis)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycolicibacterium smegmatis)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycolicibacterium smegmatis)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycolicibacterium smegmatis)
- 23s rrna (1 MDa, RNA from Mycolicibacterium smegmatis)
- 16s/23s rrna (cytidine-2'-o)-methyltransferase tlya (29 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l3 (22 kDa, Protein from Mycolicibacterium smegmatis)
- Tlya (Complex from Mycobacterium tuberculosis)
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 6dzi
Q-score: 0.438
Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK
PNAS (2018) 115 pp. 8191-8196 [ Pubmed: 30038002 DOI: doi:10.1073/pnas.1804555115 ]
- 30s ribosomal protein s13 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s2 (25 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 5s rna (118-mer) (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- Ribosome hibernation promoting factor (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l28 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 16s rrna (490 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l21 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l27 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l3 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l30 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s14 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s9 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s18 1 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l5 (20 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 70s-mpy complex (Complex from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l22 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Uncharacterized protein (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s16 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l29 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l31 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l10 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l11 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l25 (20 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l17 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Conserved protein domain (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s19 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s11 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s17 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s5 (18 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 23 s rrna (3119-mer) (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)