43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7ase
Q-score: 0.314
Bochler A, Querido JB, Prilepskaja T, Soufari H, Simonetti A, Del Cistia ML, Kuhn L, Ribeiro AR, Valasek LS, Hashem Y
Cell Rep (2020) 33 pp. 108534-108534 [ Pubmed: 33357443 DOI: doi:10.1016/j.celrep.2020.108534 ]
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein sa (27 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma cruzi)
- Putative eukaryotic translation initiation factor 1a (18 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 8, putative (82 kDa, Protein from Trypanosoma cruzi)
- Csn8_psd8_eif3k domain-containing protein (22 kDa, Protein from Trypanosoma cruzi)
- Eif3a (87 kDa, Protein from Trypanosoma cruzi)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 18s (746 kDa, RNA from Trypanosoma cruzi)
- 40s ribosomal protein s7 (24 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s29, putative (6 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 (eif-3) interacting protein, putative (56 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma cruzi)
- 60s ribosomal protein l40 (16 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s15a, putative (16 kDa, Protein from Trypanosoma cruzi)
- Translation initiation factor, putative (38 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s16, putative (16 kDa, Protein from Trypanosoma cruzi)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma cruzi)
- Protein translation factor sui1 homolog, putative (12 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 2 subunit, putative (52 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 5, putative (42 kDa, Protein from Trypanosoma cruzi)
- Jab_mpn domain-containing protein (38 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s33 (10 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma cruzi)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma cruzi)
- Kddx60 (246 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma cruzi)
- Rna-binding protein, putative (27 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s20, putative (13 kDa, Protein from Trypanosoma cruzi)
- Initiator trna-met (24 kDa, RNA from Trypanosoma cruzi)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma cruzi)
- El41 (4 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s10, putative (18 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3a-2 (29 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s11, putative (20 kDa, Protein from Trypanosoma cruzi)
- Eif3h (38 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma cruzi)
- Zinc ion (65 Da, Ligand)
- Putative 40s ribosomal protein s21 (27 kDa, Protein from Trypanosoma cruzi)
- Elongation initiation factor 2 alpha subunit, putative (47 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s14, putative (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma cruzi)
- 43s preinitiation complex from trypanosoma cruzi with the helicase kddx60 (Complex from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit e (46 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 7-like protein, putative (57 kDa, Protein from Trypanosoma cruzi)
Cryo-EM map of human ribosome in hybrid-PRE state
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6y57
Q-score: 0.462
Bhaskar V, Graff-Meyer A, Schenk AD, Cavadini S, von Loeffelholz O, Natchiar SK, Artus-Revel CG, Hotz HR, Bretones G, Klaholz BP, Chao JA
Cell Rep (2020) 31 pp. 107473-107473 [ Pubmed: 32268098 DOI: doi:10.1016/j.celrep.2020.03.037 ]
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 5.8s ribosomal rna (50 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Mrna (4 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- Human ribosomes in the classical-pre state (4 MDa, Complex from Homo sapiens)
- 5s ribosomal rna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- A/p trna (24 kDa, RNA from Homo sapiens)
- P/e trna (24 kDa, RNA from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 28s ribosomal rna (1 MDa, RNA from Homo sapiens)
Cryo-EM reconstruction of the small subunit of the Mycobacterium smegmatis ribosome
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 5o5j
Q-score: 0.46
Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N
Cell Rep (2017) 20 pp. 149-160 [ DOI: doi:10.1016/j.celrep.2017.06.029 Pubmed: 28683309 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 16s rrna (495 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Mrna fragment (1 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s small ribosomal subunit (Complex from Mycobacterium smegmatis str. MC2 155)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Trna-phe anticodon stem (6 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)