A. baumannii Ribosome-Eravacycline complex: E-site tRNA 70S
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7m4y
Q-score: 0.626
Zhang Z, Morgan CE, Bonomo RA, Yu EW
Mbio (2021) 12 pp. e0103121-e0103121 [ Pubmed: 34044590 DOI: doi:10.1128/mBio.01031-21 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- Water (18 Da, Ligand)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- Eravacycline (558 Da, Ligand)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- A baumannii 70s ribosome with e-site trna in complex with eravacycline (Complex from Acinetobacter baumannii AB0057)
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site occupied
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 6v39
Q-score: 0.484
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter sp. CIP 102082)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter sp. CIP 51.11)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter sp. 263903-1)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter rudis CIP 110305)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Water (18 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter sp. ANC 4470)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter beijerinckii ANC 3835)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter sp. 809848)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- N-formylmethionine (177 Da, Ligand)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter sp. NIPH 899)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Sodium ion (22 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- Mrna 5'-aug-3' (935 Da, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Acinetobacter baumannii 70s ribosome with p-site trna (2 MDa, Complex from Acinetobacter baumannii AB0057)
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 6v3a
Q-score: 0.531
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter sp. CIP 102082)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter sp. CIP 51.11)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter sp. 263903-1)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter rudis CIP 110305)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Water (18 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter sp. ANC 4470)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter beijerinckii ANC 3835)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter sp. 809848)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- Acinetobacter baumannii 70s ribosome with e-site trna bound (2 MDa, Complex from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter sp. NIPH 899)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Sodium ion (22 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 6v3b
Q-score: 0.515
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter sp. CIP 102082)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- Acinetobacter baumannii 70s ribosome with no trna bound (2 MDa, Complex from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter sp. CIP 51.11)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter sp. 263903-1)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter rudis CIP 110305)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Water (18 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter sp. ANC 4470)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter beijerinckii ANC 3835)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter sp. 809848)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter sp. NIPH 899)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Sodium ion (22 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6v3e
Q-score: 0.28
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii)
- Acinetobacter baumannii small ribosomal subunit (2 MDa, Complex from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5t7v
Q-score: 0.462
Belousoff MJ, Eyal Z, Radjainia M, Ahmed T, Bamert RS, Matzov D, Bashan A, Zimmerman E, Mishra S, Cameron D, Elmlund H, Peleg AY, Bhushan S, Lithgow T, Yonath A
mBio (2017) 8 [ DOI: doi:10.1128/mBio.00395-17 Pubmed: 28487427 ]
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- E-site trna (23 kDa, RNA from Staphylococcus aureus)
- 23s ribosomal rna (945 kDa, RNA from Staphylococcus aureus)
- 16s ribosomal rna (500 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l18 (12 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- Clinical isolate linezolid resistant mrsa 70s ribosome (Complex from Staphylococcus aureus)
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s6 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s16 (8 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s10 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
Methicillin sensitive Staphylococcus aureus 70S ribosome
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5tcu
Q-score: 0.431
Belousoff MJ, Eyal Z, Radjainia M, Ahmed T, Bamert RS, Matzov D, Bashan A, Zimmerman E, Mishra S, Cameron D, Elmlund H, Peleg AY, Bhushan S, Lithgow T, Yonath A
mBio (2017) 8 [ DOI: doi:10.1128/mBio.00395-17 Pubmed: 28487427 ]
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- P-site trna chain (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- E-site trna chain (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l19 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s rrna (502 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Paromomycin (615 Da, Ligand)
- Methicillin sensitive staphylococcus aureus 70s ribosome (atcc 35556) (Complex from Staphylococcus aureus)
- 50s ribosomal protein l35 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s10 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 23s rrna (946 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Mrna (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 1 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 5s rrna chain (36 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l5 (18 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l31 type b (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l18 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))