Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6az3
Q-score: 0.599
Shalev-Benami M, Zhang Y, Rozenberg H, Nobe Y, Taoka M, Matzov D, Zimmerman E, Bashan A, Isobe T, Jaffe CL, Yonath A, Skiniotis G
Nat Commun (2017) 8 pp. 1589-1589 [ Pubmed: 29150609 DOI: doi:10.1038/s41467-017-01664-4 ]
- Ribosomal l38e family protein (8 kDa, Protein from Leishmania donovani)
- Rrna 5.8s (54 kDa, RNA from Leishmania donovani)
- Rrna zeta (22 kDa, RNA from Leishmania donovani)
- Ribosomal protein l35ae family protein (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l11 (l5, l16) (19 kDa, Protein from Leishmania donovani)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania donovani)
- 60s ribosomal subunit protein l31, putative (13 kDa, Protein from Leishmania donovani)
- Magnesium ion (24 Da, Ligand)
- Rrna delta (59 kDa, RNA from Leishmania donovani)
- Rrna alpha (575 kDa, RNA from Leishmania donovani)
- Ribosomal protein ul3 (45 kDa, Protein from Leishmania donovani)
- Rrna epsilon (42 kDa, RNA from Leishmania donovani)
- Rrna 5s (37 kDa, RNA from Leishmania donovani)
- Leishmania donovani 91s ribosome lsu (Complex from Leishmania donovani)
- 60s ribosomal protein l7a (39 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l17, putative (17 kDa, Protein from Leishmania donovani)
- Water (18 Da, Ligand)
- 60s ribosomal protein l7 family protein (26 kDa, Protein from Leishmania donovani)
- Ribosomal protein l19e family protein (22 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l23a, putative (13 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l37 (9 kDa, Protein from Leishmania donovani)
- 60s_ribosomal_protein_l32/genedb:lmjf.21.1720 (15 kDa, Protein from Leishmania donovani)
- Ribosomal protein el6 (21 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l18, putative (21 kDa, Protein from Leishmania donovani)
- Probable 60s ribosomal protein l14 (17 kDa, Protein from Leishmania donovani)
- Ubiquitin-60s ribosomal protein l40 (5 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l28, putative (15 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l34, putative (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l36, putative (11 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l30 (10 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania donovani)
- Rrna beta (492 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l22, putative (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l44, putative (11 kDa, Protein from Leishmania donovani)
- Ribosomal protein el24 (7 kDa, Protein from Leishmania donovani)
- Rrna gamma (67 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul2 (27 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l27a/l29, putative (16 kDa, Protein from Leishmania donovani)
- Ribosomal l27e family protein (15 kDa, Protein from Leishmania donovani)
- Paromomycin (615 Da, Ligand)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania donovani)
- Ribosomal protein el41 (4 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul24 (13 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul13 (25 kDa, Protein from Leishmania donovani)
- Ribosomal protein l1a, putative (40 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l29 (7 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Leishmania donovani)
- 60s_ribosomal_protein_l35_putative/genedb:lmjf.26.2330/genedb:lmjf.26.2340 (14 kDa, Protein from Leishmania donovani)
- Ribosomal protein el13 (23 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l21, putative (17 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Leishmania donovani)