Atomic structure of wheat ribosome reveals unique features of the plant ribosomes
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8jiv
Q-score: 0.649
Mishra RK, Sharma P, Khaja FT, Uday AB, Hussain T
Structure (2024) 32 pp. 562- [ Pubmed: 38458197 DOI: doi:10.1016/j.str.2024.02.006 ]
- 60s ribosomal protein l38 (8 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l11 (20 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l29 (6 kDa, Protein from Triticum aestivum)
- Trash domain-containing protein (18 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el32 (15 kDa, Protein from Triticum aestivum)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l35 (14 kDa, Protein from Triticum aestivum)
- Ribosomal protein l2 c-terminal domain-containing protein (28 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l18a (21 kDa, Protein from Triticum aestivum)
- Ribosomal protein l37 (10 kDa, Protein from Triticum aestivum)
- Ribosomal protein l5 eukaryotic c-terminal domain-containing protein (35 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l34 (13 kDa, Protein from Triticum aestivum)
- 25s rrna (1 MDa, RNA from Triticum aestivum)
- Ribosomal protein l19 (24 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l21 (18 kDa, Protein from Triticum aestivum)
- Ribosomal protein l7ae/l30e/s12e/gadd45 domain-containing protein (12 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- Ribosomal protein l10e/l16 domain-containing protein (24 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (16 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul22 (19 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l37a, expressed (10 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l6 (25 kDa, Protein from Triticum aestivum)
- Ribosomal protein l15 (24 kDa, Protein from Triticum aestivum)
- 5.8s rrna (50 kDa, RNA from Triticum aestivum)
- The large subunit of wheat ribosome (Complex from Triticum aestivum)
- Genome assembly, chromosome: ii (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l13 (24 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l36 (12 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l31 (14 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (12 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l14e domain-containing protein (15 kDa, Protein from Triticum aestivum)
- Ribosomal protein l18e/l15p domain-containing protein (21 kDa, Protein from Triticum aestivum)
- Kow domain-containing protein (14 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l4 c-terminal domain-containing protein (44 kDa, Protein from Triticum aestivum)
- Ribosomal protein l18e/l15p domain-containing protein (16 kDa, Protein from Triticum aestivum)
- Ribosomal l28e/mak16 domain-containing protein (16 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein l3 (44 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l7a (29 kDa, Protein from Triticum aestivum)
- 5s rrna (38 kDa, RNA from Triticum aestivum)
- Ribosomal protein l13a (23 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein l27 (15 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein el33 (12 kDa, Protein from Triticum aestivum)
- Ribosomal protein l39 (6 kDa, Protein from Triticum aestivum)
- Ribosomal protein l17 (14 kDa, Protein from Triticum aestivum)
- Ribosomal protein l6 alpha-beta domain-containing protein (21 kDa, Protein from Triticum aestivum)
- 60s ribosomal protein ul30 (28 kDa, Protein from Triticum aestivum)
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7zjw
Q-score: 0.514
Hilal T, Killam BY, Grozdanovic M, Dobosz-Bartoszek M, Loerke J, Burger J, Mielke T, Copeland PR, Simonovic M, Spahn CMT
Science (2022) 376 pp. 1338-1343 [ DOI: doi:10.1126/science.abg3875 Pubmed: 35709277 ]
- Ser-trna-sec (Complex from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- 80s-selenosome (3 MDa, Complex)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- 60s ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- Eefsec (67 kDa, Protein from Homo sapiens)
- 60s ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
- Eefsec and secis binding protein 2 (Complex from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (Complex from Cricket paralysis virus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Serine (105 Da, Ligand)
- 60s ribosomal protein ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Sodium ion (22 Da, Ligand)
- 60s ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- Human ser-trna-sec (28 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome (Complex from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- Secis binding protein 2 (95 kDa, Protein from Homo sapiens)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 60s ribosomal protein el30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (345 kDa, RNA from Cricket paralysis virus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (275 kDa, RNA from Rattus norvegicus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (Complex from Rattus norvegicus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 6zj3
Q-score: 0.548
Matzov D, Taoka M, Nobe Y, Yamauchi Y, Halfon Y, Asis N, Zimermann E, Rozenberg H, Bashan A, Bhushan S, Isobe T, Gray MW, Yonath A, Shalev-Benami M
Nucleic Acids Res (2020) 48 pp. 11750-11761 [ DOI: doi:10.1093/nar/gkaa893 Pubmed: 33091122 ]
- Lsu rrna chain 4 (225 kDa, RNA from Euglena gracilis)
- 18s rrna (747 kDa, RNA from Euglena gracilis)
- 5s rrna (38 kDa, RNA from Euglena gracilis)
- Ribosomal protein el32 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein el37 (13 kDa, Protein from Euglena gracilis)
- Water (18 Da, Ligand)
- Ribosomal protein es19 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein us2 (29 kDa, Protein from Euglena gracilis)
- P-trna (24 kDa, RNA from Euglena gracilis)
- Lsu rrna chain 10 (20 kDa, RNA from Euglena gracilis)
- Lsu rrna chain 5 (170 kDa, RNA from Euglena gracilis)
- Ribosomal protein es10 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein us13 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein el18 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein es17 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein es7 (22 kDa, Protein from Euglena gracilis)
- Ribosomal protein el43 (12 kDa, Protein from Euglena gracilis)
- Ribosomal protein el31 (17 kDa, Protein from Euglena gracilis)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein el22 (18 kDa, Protein from Euglena gracilis)
- Rack1 (34 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul4 (41 kDa, Protein from Euglena gracilis)
- Ribosomal protein el39 (6 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 7 (240 kDa, RNA from Euglena gracilis)
- Ribosomal protein es28 (8 kDa, Protein from Euglena gracilis)
- Ribosomal protein el36 (12 kDa, Protein from Euglena gracilis)
- Ribosomal protein us5 (27 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul15 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul14 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein es30 (7 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 11 (30 kDa, RNA from Euglena gracilis)
- Ribosomal protein us17 (19 kDa, Protein from Euglena gracilis)
- Ribosomal protein us19 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein es31 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein el41 (4 kDa, Protein from Euglena gracilis)
- Ribosomal protein el19 (29 kDa, Protein from Euglena gracilis)
- Ribosomal protein eseug1 (32 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 9 (52 kDa, RNA from Euglena gracilis)
- Ribosomal protein ul24 (16 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 1 (42 kDa, RNA from Euglena gracilis)
- 60s ribosomal protein l7a (32 kDa, Protein from Euglena gracilis)
- Ribosomal protein es24 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein us12 (15 kDa, Protein from Euglena gracilis)
- Ribosomal protein es1 (28 kDa, Protein from Euglena gracilis)
- Euglena gracilis 80s ribosome (Complex from Euglena gracilis)
- Ribosomal protein us9 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul29 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein us11 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein elegr2 (8 kDa, Protein from Euglena gracilis)
- Ribosomal protein us7 (21 kDa, Protein from Euglena gracilis)
- 60s ribosomal protein l10 (24 kDa, Protein from Euglena gracilis)
- Ribosomal protein es27 (9 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul18 (29 kDa, Protein from Euglena gracilis)
- Ribosomal protein el20 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein us14 (6 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 8 (199 kDa, RNA from Euglena gracilis)
- Ribosomal protein elegr3 (7 kDa, Protein from Euglena gracilis)
- Ribosomal protein es12 (15 kDa, Protein from Euglena gracilis)
- Ribosomal protein us4 (22 kDa, Protein from Euglena gracilis)
- Ribosomal protein es21 (10 kDa, Protein from Euglena gracilis)
- Ribosomal protein el40 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein el27 (15 kDa, Protein from Euglena gracilis)
- 5.8s rrna (52 kDa, RNA from Euglena gracilis)
- A-site trna (3 kDa, RNA from Euglena gracilis)
- Ribosomal protein ul13 (24 kDa, Protein from Euglena gracilis)
- A-trna (24 kDa, RNA from Euglena gracilis)
- Ribosomal protein ul5 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein es6 (31 kDa, Protein from Euglena gracilis)
- Ribosomal protein el29 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul3 (46 kDa, Protein from Euglena gracilis)
- Ribosomal protein es8 (35 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul22 (18 kDa, Protein from Euglena gracilis)
- Ribosomal protein es26 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul2 (28 kDa, Protein from Euglena gracilis)
- Ribosomal protein el33 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul30 (28 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 6 (75 kDa, RNA from Euglena gracilis)
- Ribosomal protein el21 (18 kDa, Protein from Euglena gracilis)
- Ribosomal protein el34 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein el30 (12 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 2 (113 kDa, RNA from Euglena gracilis)
- Ribosomal protein us8 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein es4 (31 kDa, Protein from Euglena gracilis)
- Ribosomal protein el24 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein us10 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein us3 (24 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul23 (18 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 3 (37 kDa, RNA from Euglena gracilis)
- Ribosomal protein el42 (10 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 13 (27 kDa, RNA from Euglena gracilis)
- Ribosomal protein el14 (25 kDa, Protein from Euglena gracilis)
- Ribosomal protein es25 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein elegr1 (7 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul6 (22 kDa, Protein from Euglena gracilis)
- Ribosomal protein el38 (9 kDa, Protein from Euglena gracilis)
- Ribosomal protein us15 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein el6 (22 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 12 (18 kDa, RNA from Euglena gracilis)
- Ribosomal protein el15 (24 kDa, Protein from Euglena gracilis)
- E-trna (24 kDa, RNA from Euglena gracilis)
- Ribosomal protein el13 (25 kDa, Protein from Euglena gracilis)
E. coli 50S with phazolicin (PHZ) bound in exit tunnel
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 6u48
Q-score: 0.549
Travin DY, Watson ZL, Metelev M, Ward FR, Osterman IA, Khven IM, Khabibullina NF, Serebryakova M, Mergaert P, Polikanov YS, Cate JHD, Severinov K
Nat Commun (2019) 10 pp. 4563-4563 [ Pubmed: 31594941 DOI: doi:10.1038/s41467-019-12589-5 ]
- 50s ribosomal protein bl35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl32 (6 kDa, Protein from Escherichia coli)
- E. coli 50s (Complex from Escherichia coli)
- 50s ribosomal protein ul23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul2 (29 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein ul16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl33 (5 kDa, Protein from Escherichia coli)
- Phazolicin (Complex from Rhizobium sp. Pop5)
- 50s ribosomal protein ul3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl34 (5 kDa, Protein from Escherichia coli)
- E. coli ribosome with phazolicin in exit tunnel (Complex)
- 50s ribosomal protein bl20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul29 (7 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- Phazolicin (2 kDa, Protein from Rhizobium sp. Pop5)
- 50s ribosomal protein ul11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein ul4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein bl19 (13 kDa, Protein from Escherichia coli)
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6frk
Q-score: 0.363
Kobayashi K, Jomaa A, Lee JH, Chandrasekar S, Boehringer D, Shan SO, Ban N
Science (2018) 360 pp. 323-327 [ Pubmed: 29567807 DOI: doi:10.1126/science.aar7924 ]
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- Ribosomal protein el36 (11 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ribosomal protein ul18 (33 kDa, Protein from Rabbit)
- Ribosomal protein ul30 (26 kDa, Protein from Rabbit)
- Signal recognition particle 14 kda protein (12 kDa, Protein from Dog)
- Ribosomal protein ul3 (44 kDa, Protein from Rabbit)
- Ribosomal protein ul5 (19 kDa, Protein from Rabbit)
- Srp receptor alpha subunit (72 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el24 (7 kDa, Protein from Rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein el20 (20 kDa, Protein from Rabbit)
- Ribosomal protein el13 (24 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp19 (12 kDa, Protein from Dog)
- Ribosomal protein el40 (6 kDa, Protein from Rabbit)
- Ribosomal protein el31 (12 kDa, Protein from Rabbit)
- Ribosomal protein el14 (16 kDa, Protein from Rabbit)
- Ribosomal protein el30 (10 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp68 (65 kDa, Protein from Dog)
- Signal recognition particle subunit srp72,signal recognition particle subunit srp72,signal recognition particle subunit srp72 (67 kDa, Protein from Dog)
- Signal sequence (1 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein el6 (27 kDa, Protein from Rabbit)
- Srp receptor beta subunit (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el22 (11 kDa, Protein from Rabbit)
- Ribosomal protein el21 (18 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Signal recognition particle 9 kda protein (8 kDa, Protein from Dog)
- Ribosomal protein el38 (8 kDa, Protein from Rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Ribosomal protein el8 (27 kDa, Protein from Rabbit)
- Ribosomal protein ul22 (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l29 (8 kDa, Protein from Rabbit)
- Translating ribosome bound to srp and srp receptor (Complex)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein el28 (14 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Ribosomal protein l8 (26 kDa, Protein from Rabbit)
- Ribosomal protein el19 (21 kDa, Protein from Rabbit)
- Ribosomal protein el32 (15 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- Ribosomal protein el42 (12 kDa, Protein from Rabbit)
- Ribosomal protein el18 (21 kDa, Protein from Rabbit)
- Signal recognition particle 54 kda protein (55 kDa, Protein from Dog)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein el41 (3 kDa, Protein from Rabbit)
- Trna (24 kDa, RNA from Rabbit)
- 60s acidic ribosomal protein p0 (22 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosomal protein l23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el34 (12 kDa, Protein from Rabbit)
- Signal sequence (Complex from Saccharomyces cerevisiae)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Ribosomal protein ul16 (24 kDa, Protein from Rabbit)
- Srp (Complex from Canis lupus familiaris)
- Ribosomal protein el33 (12 kDa, Protein from Rabbit)
- Canis lupus familiaris rna, 7sl, cytoplasmic 1 (rn7sl1), srp rna (96 kDa, RNA from Canis lupus familiaris)
- Ribosomal protein ul29 (14 kDa, Protein from Rabbit)
- Ribosomal protein ul13 (23 kDa, Protein from Rabbit)
- Srp receptor (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul24 (15 kDa, Protein from Rabbit)
Large subunit of Toxoplasma gondii ribosome
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 5xxb
Q-score: 0.507
Li Z, Guo Q, Zheng L, Ji Y, Xie YT, Lai DH, Lun ZR, Suo X, Gao N
Cell Res (2017) 27 pp. 1275-1288 [ Pubmed: 28809395 DOI: doi:10.1038/cr.2017.104 ]
- Ribosomal protein el40 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul29 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el43 (10 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul24 (16 kDa, Protein from Toxoplasma gondii)
- 5.8s rna (50 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein ul15 (16 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul23 (18 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el38 (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el21 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el29 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el19 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el18 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el28 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el30 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul3 (44 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul16 (24 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el14 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul6 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el15 (24 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el24 (17 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul14 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el22 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el32 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul4 (45 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el8 (31 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el6 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul5 (20 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el36 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul30 (30 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el42 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul22 (22 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul2 (28 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el37 (11 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el33 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el34 (15 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el39 (6 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul13 (31 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el27 (16 kDa, Protein from Toxoplasma gondii)
- 25s rna (1 MDa, RNA from Toxoplasma gondii)
- Large subunit of toxoplasma gondii ribosome (Complex from Toxoplasma gondii)
- 5s rna (39 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein el31 (14 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el20 (21 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein el13 (39 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein ul18 (35 kDa, Protein from Toxoplasma gondii)