Yeast RAVE bound to V-ATPase V1 complex
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9cop
Q-score: 0.252
Wang H, Tarsio M, Kane PM, Rubinstein JL
PNAS (2024) 121 pp. e2414511121-e2414511121 [ DOI: doi:10.1073/pnas.2414511121 Pubmed: 39625975 ]
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase catalytic subunit a (118 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae)
- Yeast rave bound to v-atpase v1 complex (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit h (54 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae)
- Regulator of v-atpase in vacuolar membrane protein 2 (40 kDa, Protein from Saccharomyces cerevisiae)
- Regulator of v-atpase in vacuolar membrane protein 1 (155 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit g (12 kDa, Protein from Saccharomyces cerevisiae)
Yeast VO in complex with Vma12-22p
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8eas
Q-score: 0.606
Wang H, Bueler SA, Rubinstein JL
PNAS (2023) 120 pp. e2217181120-e2217181120 [ DOI: doi:10.1073/pnas.2217181120 Pubmed: 36724250 ]
- Yeast v-atpase subunit f (9 kDa, Protein from Saccharomyces cerevisiae)
- Yeast vo in complex with vma12-22p (Complex from Saccharomyces cerevisiae)
- Vacuolar atpase assembly protein vma22 (21 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase assembly factor vma12p (16 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit a, vacuolar isoform (95 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae)
Yeast VO missing subunits a, e, and f in complex with Vma12-22p
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8eat
Q-score: 0.529
Wang H, Bueler SA, Rubinstein JL
PNAS (2023) 120 pp. e2217181120-e2217181120 [ DOI: doi:10.1073/pnas.2217181120 Pubmed: 36724250 ]
- Vacuolar atpase assembly protein vma22 (21 kDa, Protein from Saccharomyces cerevisiae)
- Vacuolar atpase assembly integral membrane protein vph2 (25 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae)
- Yeast vo missing subunits a, e, and f in complex with vma12-22p (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae)
Yeast VO in complex with Vma21p
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8eau
Q-score: 0.518
Wang H, Bueler SA, Rubinstein JL
PNAS (2023) 120 pp. e2217181120-e2217181120 [ DOI: doi:10.1073/pnas.2217181120 Pubmed: 36724250 ]
- Yeast v-atpase subunit f (9 kDa, Protein from Saccharomyces cerevisiae)
- Yeast vo in complex with vma21p (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit a, vacuolar isoform (95 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae)
- Vacuolar atpase assembly integral membrane protein vma21 (8 kDa, Protein from Saccharomyces cerevisiae)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae)
Yeast VO in complex with Vma12-22p purified via Vma21p-3xFLAG
Wang H, Bueler SA, Rubinstein JL
PNAS (2023) 120 pp. e2217181120-e2217181120 [ DOI: doi:10.1073/pnas.2217181120 Pubmed: 36724250 ]
- V-type proton atpase assembly factor vma22p (Protein from Saccharomyces cerevisiae)
- Yeast vo in complex with vma12-22p purified via vma21p-3xflag (Complex from Saccharomyces cerevisiae)
- V-type proton atpase subunit c (Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit a (Protein from Saccharomyces cerevisiae)
- V-type proton atpase assembly factor vma12p (Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit e (Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit f (Protein from Saccharomyces cerevisiae)
- V-type proton atpase voa1p (Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit f (Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit d (Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c'' (Protein from Saccharomyces cerevisiae)
- V-type proton atpase subunit c' (Protein from Saccharomyces cerevisiae)
Yeast ATP synthase State 2binding(b) with 10 mM ATP backbone model
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 7tkf
Q-score: 0.265
Nat Commun (2022) 13 pp. 2232-2232 [ Pubmed: 35468906 DOI: doi:10.1038/s41467-022-29893-2 ]
- Atp synthase subunit delta (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha (55 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit f (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9 (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4 (23 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit j (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma (30 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d (19 kDa, Protein from Saccharomyces cerevisiae)
- Yeast atp synthase state 2binding(b) with 10 mm atpv backbone model (610 kDa, Complex from Saccharomyces cerevisiae)
- Atp synthase subunit beta (51 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae)
Yeast ATP synthase State 2catalytic(a) with 10 mM ATP backbone model
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7tkg
Q-score: 0.336
Nat Commun (2022) 13 pp. 2232-2232 [ Pubmed: 35468906 DOI: doi:10.1038/s41467-022-29893-2 ]
- Atp synthase subunit delta (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha (55 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit f (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9 (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4 (23 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit j (6 kDa, Protein from Saccharomyces cerevisiae)
- Yeast atp synthase state 2catalytic(a) with 10 mm atp backbone model (610 kDa, Complex from Saccharomyces cerevisiae)
- Atp synthase subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma (30 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d (19 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit beta (51 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae)
Yeast ATP synthase State 2catalytic(b) with 10 mM ATP backbone model
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7tkh
Q-score: 0.347
Nat Commun (2022) 13 pp. 2232-2232 [ Pubmed: 35468906 DOI: doi:10.1038/s41467-022-29893-2 ]
- Atp synthase subunit delta (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha (55 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit f (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9 (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4 (23 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit j (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma (30 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d (19 kDa, Protein from Saccharomyces cerevisiae)
- Yeast atp synthase state 2catalytic(b) with 10 mm atp backbone model (610 kDa, Complex from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit beta (51 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae)
Yeast ATP synthase State 2catalytic(c) with 10 mM ATP backbone model
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 7tki
Q-score: 0.24
Nat Commun (2022) 13 pp. 2232-2232 [ Pubmed: 35468906 DOI: doi:10.1038/s41467-022-29893-2 ]
- Atp synthase subunit delta (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha (55 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit f (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9 (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4 (23 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit j (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma (30 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d (19 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit beta (51 kDa, Protein from Saccharomyces cerevisiae)
- Yeast atp synthase state 2catalytic(c) with 10 mm atp backbone model (610 kDa, Complex from Saccharomyces cerevisiae)
Yeast ATP synthase State 2catalytic(d) with 10 mM ATP backbone model
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 7tkj
Q-score: 0.227
Nat Commun (2022) 13 pp. 2232-2232 [ Pubmed: 35468906 DOI: doi:10.1038/s41467-022-29893-2 ]
- Atp synthase subunit delta (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha (55 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit f (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9 (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4 (23 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit j (6 kDa, Protein from Saccharomyces cerevisiae)
- Yeast atp synthase state 2catalytic(d) with 10 mm atp backbone model (610 kDa, Complex from Saccharomyces cerevisiae)
- Atp synthase subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma (30 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d (19 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit beta (51 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae)