Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7khr
Q-score: 0.493
Wang R, Wang J, Hassan A, Lee CH, Xie XS, Li X
Nat Commun (2021) 12 pp. 1782-1782 [ Pubmed: 33741963 DOI: doi:10.1038/s41467-021-22111-5 ]
- Renin receptor (39 kDa, Protein from Bos taurus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Bos taurus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase subunit d 1 (40 kDa, Protein from Bos taurus)
- Ribonuclease kappa (11 kDa, Protein from Bos taurus)
- Cryo-em structure of bafilomycin a1-bound intact v-atpase from bovine brain (Complex from Bos taurus)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Bos taurus)
- V-type proton atpase subunit s1 (51 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- V-type proton atpase subunit c 1 (44 kDa, Protein from Bos taurus)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Bos taurus)
- (5r)-2,4-dideoxy-1-c-{(2s,3r,4s)-3-hydroxy-4-[(2r,3s,4e,6e,9r,10s,11r,12e,14z)-10-hydroxy-3,15-dimethoxy-7,9,11,13-tetramethyl-16-oxo-1-oxacyclohexadeca-4,6,12,14-tetraen-2-yl]pentan-2-yl}-4-methyl-5-propan-2-yl-alpha-d-threo-pentopyranose (622 Da, Ligand)
- V-type proton atpase subunit a (96 kDa, Protein from Bos taurus)
- V-type proton atpase subunit h (54 kDa, Protein from Bos taurus)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Bos taurus)
- V-type proton atpase subunit f (13 kDa, Protein from Bos taurus)
- V-type proton atpase subunit e 2 (9 kDa, Protein from Bos taurus)
- Oleic acid (282 Da, Ligand)
- V-type proton atpase subunit g (13 kDa, Protein from Bos taurus)
- Methyl (3r,6z,10e,14e)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate (534 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Bos taurus)
- V-type proton atpase subunit d (28 kDa, Protein from Bos taurus)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6u8y
Q-score: 0.414
Yu H, Haja DK, Schut GJ, Wu CH, Meng X, Zhao G, Li H, Adams MWW
Nat Commun (2020) 11 pp. 5953-5953 [ Pubmed: 33230146 DOI: doi:10.1038/s41467-020-19697-7 ]
- Monovalent cation/h+ antiporter subunit c (12 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit (33 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit b (22 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit g (13 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit m (67 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit f (9 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit c (20 kDa, Protein from Pyrococcus furiosus COM1)
- Iron/sulfur cluster (351 Da, Ligand)
- Respiratory membrane complex (Complex from Pyrococcus furiosus)
- Monovalent cation/h+ antiporter subunit b (25 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit n (53 kDa, Protein from Pyrococcus furiosus COM1)
- Duf4040 domain-containing protein (10 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit i (24 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit e (19 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit d (44 kDa, Protein from Pyrococcus furiosus COM1)
cryoEM structure of a respiratory membrane-bound hydrogenase
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6cfw
Q-score: 0.499
Yu H, Wu CH, Schut GJ, Haja DK, Zhao G, Peters JW, Adams MWW, Li H
Cell (2018) 173 pp. 1636- [ DOI: doi:10.1016/j.cell.2018.03.071 Pubmed: 29754813 ]
- Mbh subunit (10 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Mbh13 nadh dehydrogenase subunit (35 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit e (18 kDa, Protein from Pyrococcus furiosus COM1)
- Probable membrane-bound hydrogenase subunit mbhj (18 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Membrane-bound hydrogenase subunit beta (20 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Monovalent cation/h+ antiporter subunit g (13 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit d (55 kDa, Protein from Pyrococcus furiosus COM1)
- Formyl[bis(hydrocyanato-1kappac)]ironnickel(fe-ni) (195 Da, Ligand)
- Monovalent cation/h+ antiporter subunit c (12 kDa, Protein from Pyrococcus furiosus COM1)
- Membrane-bound hydrogenase subunit alpha (43 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Iron/sulfur cluster (351 Da, Ligand)
- Membrane-bound hydrogenase (mbh) complex (Complex from Pyrococcus furiosus)
- Monovalent cation/h+ antiporter subunit b (15 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh-plastoquinone oxidoreductase subunit (15 kDa, Protein from Pyrococcus furiosus COM1)
- Mbh subunit (13 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit f (9 kDa, Protein from Pyrococcus furiosus COM1)
- Mbh subunit (11 kDa, Protein from Pyrococcus furiosus COM1)