Yeast ATP synthase map in conformation-1 at pH 6
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8f29
Q-score: 0.301
Sharma S, Luo M, Patel H, Mueller DM, Liao M
Nat Struct Mol Biol (2024) 31 pp. 657-666 [ DOI: doi:10.1038/s41594-024-01219-4 Pubmed: 38316880 ]
- Atp synthase subunit a (25 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha, mitochondrial (54 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 5, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma, mitochondrial (28 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit j, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit beta, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit delta, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit f, mitochondrial (9 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Atp synthase subunit epsilon, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Yeast ATP synthase map in conformation-2, at pH 6
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8f39
Q-score: 0.301
Sharma S, Luo M, Patel H, Mueller DM, Liao M
Nat Struct Mol Biol (2024) 31 pp. 657-666 [ DOI: doi:10.1038/s41594-024-01219-4 Pubmed: 38316880 ]
- Atp synthase subunit a (25 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 5, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha, mitochondrial (54 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit beta, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit j, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma, mitochondrial (29 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit f, mitochondrial (9 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit delta, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit 4, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Yeast ATP Synthase in conformation-3, at pH 6
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8fkj
Q-score: 0.321
Sharma S, Luo M, Patel H, Mueller DM, Liao M
Nat Struct Mol Biol (2024) 31 pp. 657-666 [ DOI: doi:10.1038/s41594-024-01219-4 Pubmed: 38316880 ]
- Atp synthase subunit gamma (29 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 5, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (25 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha (54 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit delta, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit f, mitochondrial (9 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Atp18 isoform 1 (4 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit beta (50 kDa, Protein from Saccharomyces cerevisiae)
Yeast ATP Synthase map in presence of MgATP
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8fl8
Q-score: 0.285
Sharma S, Luo M, Patel H, Mueller DM, Liao M
Nat Struct Mol Biol (2024) 31 pp. 657-666 [ DOI: doi:10.1038/s41594-024-01219-4 Pubmed: 38316880 ]
- Atp synthase subunit 5, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (25 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha (54 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit h, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma, mitochondrial (29 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit delta, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit f, mitochondrial (9 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit 4, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- Atp18 isoform 1 (4 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit epsilon, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase subunit beta (50 kDa, Protein from Saccharomyces cerevisiae)
Monomer yeast ATP synthase Fo reconstituted in nanodisc with inhibitor of Bedaquiline bound
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6wtd
Q-score: 0.352
Luo M, Zhou W, Patel H, Srivastava AP, Symersky J, Bonar MM, Faraldo-Gomez JD, Liao M, Mueller DM
Commun Biol (2020) 3 pp. 452-452 [ DOI: doi:10.1038/s42003-020-01173-z Pubmed: 32814813 ]
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer yeast atp synthase fo reconstituted in nanodisc generated in the presence of bedaquiline (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit j, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit 4, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit f, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Monomer yeast ATP synthase (F1Fo) reconstituted in nanodisc with inhibitor of oligomycin bound.
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6cp3
Q-score: 0.355
Srivastava AP, Luo M, Zhou W, Symersky J, Bai D, Chambers MG, Faraldo-Gomez JD, Liao M, Mueller DM
Science (2018) 360 [ DOI: doi:10.1126/science.aas9699 Pubmed: 29650704 ]
- Atp synthase subunit h, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit delta, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 5, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit beta, mitochondrial (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit f, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit j, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit gamma, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer yeast atp synthase (f1fo) reconstituted in nanodisc with inhibitor of oligomycin bound. (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit 4, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase subunit epsilon, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit alpha, mitochondrial (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6cp5
Q-score: 0.3
Srivastava AP, Luo M, Zhou W, Symersky J, Bai D, Chambers MG, Faraldo-Gomez JD, Liao M, Mueller DM
Science (2018) 360 [ DOI: doi:10.1126/science.aas9699 Pubmed: 29650704 ]
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Oligomycin a (791 Da, Ligand)
- Atp synthase subunit j, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 4, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer yeast atp synthase fo reconstituted in nanodisc with inhibitor of oligomycin bound generated from focused refinement. (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit f, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Monomer yeast ATP synthase (F1Fo) reconstituted in nanodisc.
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6cp6
Q-score: 0.314
Srivastava AP, Luo M, Zhou W, Symersky J, Bai D, Chambers MG, Faraldo-Gomez JD, Liao M, Mueller DM
Science (2018) 360 [ DOI: doi:10.1126/science.aas9699 Pubmed: 29650704 ]
- Atp synthase subunit h, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit delta, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 5, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit f, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
- Atp synthase subunit gamma, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit j, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer yeast atp synthase (f1fo) reconstituted in nanodisc. (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit 4, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase subunit epsilon, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit beta, mitochondrial (51 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit alpha, mitochondrial (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Monomer yeast ATP synthase Fo reconstituted in nanodisc generated from masked refinement.
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6cp7
Q-score: 0.311
Srivastava AP, Luo M, Zhou W, Symersky J, Bai D, Chambers MG, Faraldo-Gomez JD, Liao M, Mueller DM
Science (2018) 360 [ DOI: doi:10.1126/science.aas9699 Pubmed: 29650704 ]
- Atp synthase subunit d, mitochondrial (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase protein 8 (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit j, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Atp synthase subunit 4, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monomer yeast atp synthase fo reconstituted in nanodisc generated from masked refinement. (Complex from Saccharomyces cerevisiae)
- Atp synthase subunit f, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))