Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8rb8
Q-score: 0.455
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (25 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Riboflavin (376 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Protein rnfh (9 kDa, Protein from Azotobacter vinelandii DJ)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, NADH added
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8rb9
Q-score: 0.491
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Riboflavin (376 Da, Ligand)
- Protein rnfh (9 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (24 kDa, Protein from Azotobacter vinelandii DJ)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Phosphatidylethanolamine (734 Da, Ligand)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8rbm
Q-score: 0.473
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Riboflavin (376 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (24 kDa, Protein from Azotobacter vinelandii DJ)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Phosphatidylethanolamine (734 Da, Ligand)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8rbq
Q-score: 0.444
Nat Chem Biol (2024) 20 pp. 1078-1085 [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Riboflavin (376 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (24 kDa, Protein from Azotobacter vinelandii DJ)
- Protein rnfh (9 kDa, Protein from Azotobacter vinelandii DJ)
- Phosphatidylethanolamine (734 Da, Ligand)
- Heptameric complex nadh:ferredoxin oxidoreductase rnf1 (188 kDa, Complex from Azotobacter vinelandii DJ)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8ahx
Q-score: 0.513
Nat Chem Biol (2024) [ Pubmed: 38890433 DOI: doi:10.1038/s41589-024-01641-1 ]
- Riboflavin (376 Da, Ligand)
- Protein rnfh (9 kDa, Protein from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit c (52 kDa, Protein from Azotobacter vinelandii DJ)
- Flavin mononucleotide (456 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit a (19 kDa, Protein from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit e (25 kDa, Protein from Azotobacter vinelandii DJ)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit d (39 kDa, Protein from Azotobacter vinelandii DJ)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ion-translocating oxidoreductase complex subunit b (17 kDa, Protein from Azotobacter vinelandii DJ)
- Heptameric complex of nadh:ferredoxin oxidoreductase rnf (188 kDa, Complex from Azotobacter vinelandii DJ)
- Ion-translocating oxidoreductase complex subunit g (25 kDa, Protein from Azotobacter vinelandii DJ)