p97-substrate complex with SPI substrate on subunit D
van den Boom J, Marini G, Meyer H, Saibil HR
EMBO J (2023) 42 pp. e113110-e113110 [ Pubmed: 37264685 DOI: doi:10.15252/embj.2022113110 ]
- P97 - substrate complex, substrate on subunit d (Complex from Homo sapiens)
- Pp1 gamma (Protein from Homo sapiens)
- P97 (Protein from Homo sapiens)
- Sds22 (Protein from Homo sapiens)
- I3 (Protein from Homo sapiens)
- P37 adaptor (Protein from Homo sapiens)
CryoEM Structures of Reconstituted V-ATPase, Oxr1 bound V1
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7fde
Q-score: 0.357
Khan MM, Lee S, Oot RA, Couoh-Cardel S, Kim H, Wilkens S, Roh SH
EMBO J (2021) [ ]
- Yeast vacuolar atpase subunit c (Complex from Saccharomyces cerevisiae S288c)
- Oxidation resistance protein 1 (30 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast v-type proton atpase subunits (Complex)
- Yeast vacuolar atpase a subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- Oxr1 bound v1 subcomplex of yeast vacuolar atpase (600 kDa, Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit g (13 kDa, Protein from Saccharomyces cerevisiae S288C)
CryoEM Structure of Reconstituted V-ATPase, state1
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7fda
Q-score: 0.205
Khan MM, Lee S, Oot RA, Couoh-Cardel S, Kim H, Wilkens S, Roh SH
EMBO J (2021) [ ]
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chimeric subunit h (Complex from Saccharomyces cerevisiae S288c)
- Yeast vacuolar atpase f subunit (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase in rotary state 1 (1 MDa, Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit g (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast v-type proton atpase subunit c (Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunits (Complex)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Fusion of yeast v-type proton atpase subunit h(nt) and human v-type proton atpase subunit h(ct) (53 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae S288C)
CryoEM Structures of Reconstituted V-ATPase,State2
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7fdb
Q-score: 0.043
Khan MM, Lee S, Oot RA, Couoh-Cardel S, Kim H, Wilkens S, Roh SH
EMBO J (2021) [ ]
- Chimeric subunit h (Complex from Saccharomyces cerevisiae S288c)
- Yeast vacuolar atpase a subunit (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase in rotary state 2 (1 MDa, Complex from Saccharomyces cerevisiae S288c)
- Yeast vacuolar atpase a subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Fusion of yeast v-type proton atpase subunit h(nt) and human v-type proton atpase subunit h(ct) (53 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase f subunit (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunits (Complex)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase c subunit (Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit g (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae S288C)
CryoEM Structures of Reconstituted V-ATPase, state3
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 7fdc
Q-score: 0.069
Khan MM, Lee S, Oot RA, Couoh-Cardel S, Kim H, Wilkens S, Roh SH
EMBO J (2021) [ ]
- Yeast vacuolar atpase c subunit (Complex from Saccharomyces cerevisiae S288c)
- Yeast vacuolar atpase in rotary state 3 (1 MDa, Complex from Saccharomyces cerevisiae S288c)
- V-type proton atpase subunit c (44 kDa, Protein from Saccharomyces cerevisiae S288C)
- Chimeric subunit h (Complex from Saccharomyces cerevisiae S288c)
- Yeast vacuolar atpase f subunit (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit f (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c' (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- V0 assembly protein 1 (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit g (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit e (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Yeast vacuolar atpase a subunit (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunits (Complex)
- V-type proton atpase subunit b (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit d (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Fusion of yeast v-type proton atpase subunit h(nt) and human v-type proton atpase subunit h(ct) (53 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c'' (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- V-type proton atpase subunit c (16 kDa, Protein from Saccharomyces cerevisiae S288C)
Structure of a human ABCE1-bound 43S pre-initiation complex - State III
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7a09
Q-score: 0.399
Kratzat H, Mackens-Kiani T, Ameismeier M, Potocnjak M, Cheng J, Dacheux E, Namane A, Berninghausen O, Herzog F, Fromont-Racine M, Becker T, Beckmann R
EMBO J (2021) 40 pp. e105179-e105179 [ Pubmed: 33289941 DOI: doi:10.15252/embj.2020105179 ]
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Human)
- 40s ribosomal protein s8 (24 kDa, Protein from Human)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rna recognition motif (5 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Human)
- 40s ribosomal protein s21 (9 kDa, Protein from Human)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Human)
- 40s ribosomal protein s20 (13 kDa, Protein from Human)
- 40s ribosomal protein s23 (15 kDa, Protein from Human)
- 40s ribosomal protein s13 (17 kDa, Protein from Human)
- 40s ribosomal protein s7 (22 kDa, Protein from Human)
- 40s ribosomal protein s15 (17 kDa, Protein from Human)
- 40s ribosomal protein s26 (13 kDa, Protein from Human)
- 40s ribosomal protein s19 (16 kDa, Protein from Human)
- 18s ribosomal rna (555 kDa, RNA from Human)
- 40s ribosomal protein s17 (15 kDa, Protein from Human)
- 40s ribosomal protein s10 (18 kDa, Protein from Human)
- 40s ribosomal protein s29 (6 kDa, Protein from Human)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Human)
- Eukaryotic translation initiation factor 2 subunit 2 (38 kDa, Protein from Human)
- 40s ribosomal protein s12 (14 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Human)
- 40s ribosomal protein s27 (9 kDa, Protein from Human)
- 40s ribosomal protein s6 (28 kDa, Protein from Human)
- Eukaryotic translation initiation factor 1a, x-chromosomal (12 kDa, Protein from Human)
- 40s ribosomal protein s15a (14 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Human)
- Iron/sulfur cluster (351 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Human)
- 40s ribosomal protein s9 (22 kDa, Protein from Human)
- Eukaryotic translation initiation factor 2 subunit 1 (36 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Human)
- 40s ribosomal protein s24 (15 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit b (92 kDa, Protein from Human)
- Eukaryotic translation initiation factor 2 subunit 3 (51 kDa, Protein from Human)
- 40s ribosomal protein s11 (18 kDa, Protein from Human)
- 40s ribosomal protein s2 (31 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit c,eukaryotic translation initiation factor 3 subunit c,eukaryotic translation initiation factor 3 subunit c (106 kDa, Protein from Human)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Human)
- 40s ribosomal protein sa (32 kDa, Protein from Human)
- 40s ribosomal protein s25 (13 kDa, Protein from Human)
- 40s ribosomal protein s3a (30 kDa, Protein from Human)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Eukaryotic translation initiation factor 1 (12 kDa, Protein from Human)
- 40s ribosomal protein s3 (26 kDa, Protein from Human)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- Methionine (149 Da, Ligand)
- Trna (24 kDa, RNA from Human)
- 40s ribosomal protein s16 (16 kDa, Protein from Human)
- 60s ribosomal protein l41 (3 kDa, Protein from Human)
- 40s ribosomal protein s30 (6 kDa, Protein from Human)
- 40s ribosomal protein s14 (16 kDa, Protein from Human)
- Magnesium ion (24 Da, Ligand)
- Atp-binding cassette sub-family e member 1 (67 kDa, Protein from Human)
- 40s ribosomal protein s28 (7 kDa, Protein from Human)
- 40s ribosomal protein s18 (17 kDa, Protein from Human)
- 40s ribosomal protein s5 (22 kDa, Protein from Human)
- Abce1-bound 43s pre-initiation complex (Complex from Homo sapiens)
Structure of a human ABCE1-bound 43S pre-initiation complex - State II
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6zvj
Q-score: 0.365
Kratzat H, Mackens-Kiani T, Ameismeier M, Potocnjak M, Cheng J, Dacheux E, Namane A, Berninghausen O, Herzog F, Fromont-Racine M, Becker T, Beckmann R
EMBO J (2021) 40 pp. e105179-e105179 [ DOI: doi:10.15252/embj.2020105179 Pubmed: 33289941 ]
- 40s ribosomal protein s7 (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (44 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (555 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s25 (7 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (61 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (11 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (65 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (12 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (85 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit j (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (23 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (36 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (86 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (29 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (50 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (24 kDa, Protein from Homo sapiens)
- Rna recognition motif (unknown) (5 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (21 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (35 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (5 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (16 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (28 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (10 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 40s ribosomal protein s14 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (24 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- 40s ribosomal protein s5 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (24 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Abce1-bound 43s initiation complex (Complex from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (41 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s6 (25 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (14 kDa, Protein from Homo sapiens)
- Atp-binding cassette sub-family e member 1 (66 kDa, Protein from Homo sapiens)